Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01015 ATGGCACCCCAAGCTCTCGTGTCACCCTCGCCATTATTCTCTCCTCATTCTCTTCTCCGATCATCATTCTCCGGCGTCTCCCTCAAAGTCTCTCCCCAATTCCGAACCTTTTCAACCTCCAAGCCCCTCGTCGTCGCCGCCGCCACTAAGAAAGCCGTCGCCGTTCTCAAGGGAAACTCCGCCGTCGAAGGCGTCGTAACCCTCACCCAAGAAGACGATGGTCCAACAACAGTTAATGTTCGTGTTACTGGTCTTACTCCGGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGGTGTATCTCAACGGGAGCACATTTTAATCCGAACAACAAGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGGGTTGCAGAAGCAACAATCTTGGATAATCAGATACCACTCACTGGCCCCAATTCAGTAGTTGGGAGAGCCTTAGTGGTTCATGAGCTTAAAGATGACCTTGGAAAGGGTGGGCATGAACTTAGTTTGACTACTGGAAATGCTGGTGGAAGATTAGCTTGTGGTGTTGTTGGTTTGACTCCAGTATGA 606 0.4983 MAPQALVSPSPLFSPHSLLRSSFSGVSLKVSPQFRTFSTSKPLVVAAATKKAVAVLKGNSAVEGVVTLTQEDDGPTTVNVRVTGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNKTHGAPEDEVRHAGDLGNIVANADGVAEATILDNQIPLTGPNSVVGRALVVHELKDDLGKGGHELSLTTGNAGGRLACGVVGLTPV* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01015 201 PRINTS Cu-Zn-superoxide dismutase family signature 91 113 IPR001424 GO:0006801|GO:0046872
Rops3g01015 201 PRINTS Cu-Zn-superoxide dismutase family signature 146 168 IPR001424 GO:0006801|GO:0046872
Rops3g01015 201 PRINTS Cu-Zn-superoxide dismutase family signature 127 136 IPR001424 GO:0006801|GO:0046872
Rops3g01015 201 PRINTS Cu-Zn-superoxide dismutase family signature 171 197 IPR001424 GO:0006801|GO:0046872
Rops3g01015 201 Pfam Copper/zinc superoxide dismutase (SODC) 62 196 IPR001424 GO:0006801|GO:0046872
Rops3g01015 201 Gene3D Superoxide dismutase, copper/zinc binding domain 46 200 IPR036423 GO:0006801|GO:0046872
Rops3g01015 201 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 185 196 IPR018152 -
Rops3g01015 201 SUPERFAMILY Cu,Zn superoxide dismutase-like 51 198 IPR036423 GO:0006801|GO:0046872
Rops3g01015 201 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 91 101 IPR018152 -
Rops3g01015 201 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 38 198 IPR024134 GO:0005507
Rops3g01015 201 CDD Cu-Zn_Superoxide_Dismutase 58 193 IPR001424 GO:0006801|GO:0046872
Rops3g01015 201 FunFam Superoxide dismutase [Cu-Zn], chloroplastic 47 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01015 Rops-Chr3 13109976 13113165 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01015 K04565 - gmx:100784752 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01015 3 13109976 13113165 Rops3g01015 3 13109976 13113165 ECH