Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00982 ATGGCCTCAACCAACGCTCTCTCCTCAGCCTCCATTTTTCGCTCTCCCAAGCACCAGGCACAGAGTCTCACGAGGAAGGTCAACCACAGTGGGAGGTTAAATTACAAGCAACAAACTAACCGTTTTTTGGTTAAAGCCTCTGCTAAAGAGATAGCCTTTGACCAGAACTCACGCGCCGCCCTTCAAGCCGGCATTGACAAACTCACCGATGCCGTTGGCCTCACTCTCGGTCCAAGGGGGAGGAATGTTGTGTTGGATGAGTTCGGAAGTCCTAAGGTTGTTAATGATGGTGTTACAATTGCAAGAGCTATTGAACTTCCTGATGCTATGGAAAATGCTGGTGCAGCTCTTATTAGAGAGGTTGCGAGTAAAACCAATGACTCTGCTGGTGATGGGACTACGACGGCTTCGGTTCTTGCACGAGAAATCATTAAGCTTGGACTTCTGAGTGTTACTTCTGGTGCTAATCCTGTGTCCCTTAAAAGAGGGATTGATAAAACTGTACTGGGTTTGGTGGAGGAGCTTGAGAAGAAAGCTAGGGCTGTCAAAGGTGGAGATGATATCAAAGCTGTTGCTACTATTTCTGCTGGAAATGATGAGTTGATTGGAAAAATGATTGCGGAAGCAATTGACAAGGTTGGACCTGATGGTGTTTTATCCATTGAGTCTTCGTCTTCATTTGAGACAACAGTTGAAGTTGAAGAAGGAATGGAGATCGACAGAGGGTATGTCTCTCCTCAATTTGTTACCAACCCTGAGAAATCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATTACAGACCAGAAGATTTCAGCAATAAAAGATATAATCCCTCTTTTGGAGAAAACCACTCAATTGAGAGCCCCTTTGCTTATCATTGCTGAAGATGTCACTGGTGAGGCCTTGGCTACCCTTGTTGTGAATAAGCTGCGTGGTATCCTCAATGTTGCTGCCATCAAAGCTCCTGGCTTTGGTGAGCGGCGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCGGAGTTCCAAGCTAGTGATCTTGGCCTACTTGTTGAAAACACGTCAGTTGAACAGCTTGGTTTGGCTCGGAAAGTGACCATCTCCAAGGATTCTACCACTATTATTGCTGATGCTGCATCAAAGGATGAGTTGCAAGCCAGGGTTGCACAATTAAAGAAAGAGTTGTCAGAGACAGACTCAGTTTATGATACAGAGAAACTGGCTGAGAGGATTGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGTGCTGCTACAGAGACTGAACTTGAGGATCGCAAGCTCCGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATCGTTCCTGGTGGAGGTACTGCATTGGTTCATCTCTCTGCTTTTGTCCCAGCTATCAAGGATAAGCTTGAAGATGCGGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGGCACTGATAGCACCTGCATCATTGATTGCTCAAAATGCTGGAATAGAGGGTGAAGTTGTTGTGGAGAAAATAAGGAGTGGTGAATGGGAGGTTGGTTACAATGCCATGACAGACAGGTATGAGAATTTAGTTGAGGCTGGAGTCATTGACCCTGCCAAGGTCACAAGGTGTGCTTTGCAGAATGCTGCTTCAGTGGCTGGGATGGTCTTGACCACGCAGGCCATTGTGGTGGAAAAAGCTAAGCCCAAGGCACCTGTTGCTGCTGCCCCACAAGGCCTTACTGTTTGA 1761 0.4622 MASTNALSSASIFRSPKHQAQSLTRKVNHSGRLNYKQQTNRFLVKASAKEIAFDQNSRAALQAGIDKLTDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVLGLVEELEKKARAVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYVSPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDELQARVAQLKKELSETDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAFVPAIKDKLEDADERLGADIVQKALIAPASLIAQNAGIEGEVVVEKIRSGEWEVGYNAMTDRYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKAKPKAPVAAAPQGLTV* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00982 586 Hamap Chaperonin GroEL [groEL]. 47 584 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 SUPERFAMILY GroEL apical domain-like 228 420 IPR027409 -
Rops3g00982 586 Pfam TCP-1/cpn60 chaperonin family 68 570 IPR002423 GO:0005524
Rops3g00982 586 Coils Coil 383 403 - -
Rops3g00982 586 CDD GroEL 49 569 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 39 576 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 ProSitePatterns Chaperonins cpn60 signature. 449 460 IPR018370 GO:0005524|GO:0006457
Rops3g00982 586 NCBIfam chaperonin GroEL 48 572 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 SUPERFAMILY GroEL-intermediate domain like 182 248 IPR027410 -
Rops3g00982 586 FunFam 60 kDa chaperonin 236 417 - -
Rops3g00982 586 Gene3D - 51 568 IPR027413 -
Rops3g00982 586 PRINTS 60kDa chaperonin signature 72 98 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 PRINTS 60kDa chaperonin signature 127 154 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 PRINTS 60kDa chaperonin signature 394 419 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 PRINTS 60kDa chaperonin signature 312 335 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 PRINTS 60kDa chaperonin signature 442 463 IPR001844 GO:0042026|GO:0140662
Rops3g00982 586 MobiDBLite consensus disorder prediction 1 31 - -
Rops3g00982 586 Gene3D GroEL 236 417 IPR027409 -
Rops3g00982 586 Gene3D - 181 454 IPR027410 -
Rops3g00982 586 SUPERFAMILY GroEL equatorial domain-like 52 567 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00982 Rops-Chr3 12578407 12581786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00982 - - gmx:100775463 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00982 3 12578407 12581786 Rops3g00982 3 12578407 12581786 ECH