Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00952 ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGTTTCAACCTTCCTTCATACACGTGCATTAGGGAAGGTCCTGATCACGCGCCACGGTTTAAGGCGACGGTTAACTTTAACAGCGAGATCTTTGAGAGTCCTCACTATTGTTCAACGCTGCGTCAGGCGGAACACTCCGCCGCTGAGGTGGCACTTAATTCTCTCTCTCACCGTGGACCTTCTCACTCACTCGCCGCAAGGATCCTCGATGAGACGGGAGTGTACAAGAACCTCTTACAGGAAATCGCACAAAGAGTAGGGGCTCCATTGCCACAGTACACTACATTCAGGTCAGGCCTAGGACACCTACCTGTTTTTACAGGAACAGTAGAATTAGCTGGAATTACATTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCAGAAAAAAATGCAGCTATGGCAGCTTGGTCATCTCTAAAGCAATTGGCCAAAGAAACTGCAAGCTCTTCAACTGAACCGGAGAACAATGATGAACTAGAACAGATCACCATAGCACGGGCCTTACTGAACTACCGTCAGAAGGAAAAGATGTCAATGTCAAATCCAAATGCTCCAATTCCTTTTCCAAAGAAGTTTCAGATTCAAAATCCCGGGCCAACCAGTCCTCAACCTCATCCTGTTGCAACATCAAAGATACTTCCCTTAATTTGCCAAAAGACAACAGCTCCTCGAAGCAGGCATCCAGTAACCACAGCAGCTGGCAGTGACAATTCCATGATGCCACCACTCTCTTCTACCCCAGAAAGTCGAGGGCCCCGCCGCCTGAAGTTCCCTGCAGCTGGAGCAGCACCTTATGTTCCCATTCAACAAATGCGATCACCTTGTCAGGGGATTGCACCTCCGGTGACCATAAGGACCACAATACCTGTATTCTCTGCACCACCAGCCGCGGTGTCTCATCAAGTAGTCCGGGCTCCTCCTGTACGAGTTGCTCCTTCGGTCACTATTCGGCAAGCAGTTCCAGTATTTGCTGCCCCACCAGTTCGAAAAGATGAACCTGTACCAGTTCTCATCCATAAAGGTGATCCACCAACTATGAGTGCCCCTATCCAGGAAGATAAAACTCCCACCAAGACTGAGAACATTCCAGCAGAATCTGAGACAGTGCAGAGGTTGGAGCAGCTGAAAATTTGA 1176 0.4881 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNSEIFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRQKEKMSMSNPNAPIPFPKKFQIQNPGPTSPQPHPVATSKILPLICQKTTAPRSRHPVTTAAGSDNSMMPPLSSTPESRGPRRLKFPAAGAAPYVPIQQMRSPCQGIAPPVTIRTTIPVFSAPPAAVSHQVVRAPPVRVAPSVTIRQAVPVFAAPPVRKDEPVPVLIHKGDPPTMSAPIQEDKTPTKTENIPAESETVQRLEQLKI* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00952 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Rops3g00952 391 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Rops3g00952 391 Gene3D - 2 83 - -
Rops3g00952 391 MobiDBLite consensus disorder prediction 235 265 - -
Rops3g00952 391 PANTHER - 1 341 - -
Rops3g00952 391 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Rops3g00952 391 MobiDBLite consensus disorder prediction 237 259 - -
Rops3g00952 391 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Rops3g00952 391 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Rops3g00952 391 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Rops3g00952 391 SMART DRBM_3 2 69 IPR014720 -
Rops3g00952 391 SMART DRBM_3 88 154 IPR014720 -
Rops3g00952 391 MobiDBLite consensus disorder prediction 364 382 - -
Rops3g00952 391 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Rops3g00952 391 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Rops3g00952 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Rops3g00952 391 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Rops3g00952 391 MobiDBLite consensus disorder prediction 353 391 - -
Rops3g00952 391 Gene3D - 84 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00952 Rops-Chr3 12111720 12115617 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00952 - - gmx:100812728 627.476