Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00940 ATGATGCAGGTGAAGAGAATCACAAAACAAAGATCACCGAGGAACACAATGGTGAAGAAGGACATCATCAGCACCATGCCAAATGAAGTCATTACGAATATCTTATCCCGGTTGACAATCAAAGAAGCTGGTAGGACTAGCGTGTTGTCAACTAAATGGAGATATCAATGGACCAATTTCAATGGCGTCTTGAACTTTGATCATTCACTCAAGACTTATGAGTTGCGTCGAGAACGAGTTGGACTTTTGAGAAAATGGATGCAGTTTGTTTCTGAGTGGGAGAGATTCATGAACAGTTTGGAACATGTGCTGAAATCACTCAAGAGTCCATGCATGCAAGGAATGAGAATTTGCATGGATATGGGAAACCCTGAAAAGTTAGCTGAATGGCTCAAGTTTGCTGCTGAGAAGGATGTTCGAATGCTCGACCTTGATTTTTGTTATCACTTCCATGATACATTCTTCGAAATAAGTGAGATCATTCGCAATGTCTTATCACCATCAACCTGTTTCCAAATGAAGTCACTTTGTGTCCTTCGTTTGGCTTGTGTTGATGTGACTGGTGAGGTTGTTGAAGATTTTCTAGCATCTTGTCCTTCTCTTGAAACATTGTGTGTGAGGGAATCGAAGCTCCTTGTGTTTTTGGAAGTTGCTGGTGAAGCTCTGAGGCTGAAACATTTGGAGCTGGTTGATTGCTGCAACTTTCTGTATCTTATGATCTCTGCTGAAAATCTCATGACATTAAGATACTCTGGAGATTATGCAAGAATGAAGTTTGAATGTGTCCCAAGTCTTGTGGAAGCTTCCTTTGGAGGAAGATATGGTGGTTACTTTCAATCACACATGAACAATATGGTTCTTTTTGGATTAATTTCTCATCTAGATGTTCTGAAATTGGACTGTGCATTCAATCTGGAAATTACTGAAGGCCTGCCTGTGTTCAAAAATGTGAAGCATTTGGAGCTGCAAATTCCTCATAGCTGTGGAGAGGAGCTCGATGGTCCTGTTTCTTTGTTAAGTGCATTTCCTTCAATATTCGTGCTAAAGGTTAAGTTCATTAGGACCAATCTGAGAGCAGTGGAGCAGGAGTGGAATGCCAATCTGAATGATGAGTTCCCAAACTTGGAAGAGTTGGAAGTGTCAGGATATAGAAGAGACCCAAGTCAAATAGAGTTGCTGATAAGCATATTGGAGAAAACTCCTAATCTCAAAAGGATTGTTGTGGATCCACTGTCCTCACTTCATGTGGATAGGTCACCTGATGTCAAGGCCAGGATTAGACAACTGTGTCGTCCCTCTACTTTATGGTTTGTTGATGGTATGAAACAGTATGTGCCTCCTCCCATTGAATTGGTTGTCCTGTAA 1365 0.411 MMQVKRITKQRSPRNTMVKKDIISTMPNEVITNILSRLTIKEAGRTSVLSTKWRYQWTNFNGVLNFDHSLKTYELRRERVGLLRKWMQFVSEWERFMNSLEHVLKSLKSPCMQGMRICMDMGNPEKLAEWLKFAAEKDVRMLDLDFCYHFHDTFFEISEIIRNVLSPSTCFQMKSLCVLRLACVDVTGEVVEDFLASCPSLETLCVRESKLLVFLEVAGEALRLKHLELVDCCNFLYLMISAENLMTLRYSGDYARMKFECVPSLVEASFGGRYGGYFQSHMNNMVLFGLISHLDVLKLDCAFNLEITEGLPVFKNVKHLELQIPHSCGEELDGPVSLLSAFPSIFVLKVKFIRTNLRAVEQEWNANLNDEFPNLEELEVSGYRRDPSQIELLISILEKTPNLKRIVVDPLSSLHVDRSPDVKARIRQLCRPSTLWFVDGMKQYVPPPIELVVL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00940 454 Gene3D - 2 59 - -
Rops3g00940 454 PANTHER F-BOX PROTEIN-LIKE 21 410 - -
Rops3g00940 454 Gene3D Ribonuclease Inhibitor 68 414 IPR032675 -
Rops3g00940 454 CDD F-box_AtFBL13-like 23 58 - -
Rops3g00940 454 Pfam F-box domain 23 57 IPR001810 GO:0005515
Rops3g00940 454 SUPERFAMILY F-box domain 19 62 IPR036047 GO:0005515
Rops3g00940 454 SUPERFAMILY RNI-like 139 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00940 Rops-Chr3 11974752 11976364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00940 9 270 EF-hand Containing Proteins AT5G41840 26.568 7.39e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00940 - - gmx:100778140 511.531