Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00939 ATGACAAAGAAAATACGGTTGAATTTTTCTTTGCAAGAGGATGAAGATAAAGTGGATAGCTTTGTGAAATTGGATGCAAAGGAAGGAGTGGATGATGGTTTTTCTAGGATTGAACCAAATGATTCTCTTCTCCCTGGTCTAATCGATGATGTTGCACTGAATTGTCTTGCTTGGGTTAGTAGATCTGATTATGCTTCACTAGCATGTATAAATAAAAGGTACAACTTGCTGATTAAAAGTGGGTATCTATCTGGGTTGAGGAAAAAGTTGGGGATTGTGGAGTTGGAGCATTTGGTTTATTTGGTTTGTGATCCAAGAGGATGGGAGGCTTTTGACCCCAAGAGAAATAGATGGATAACATTACCTAAGATACCTTGTGATGAGTGTTTTAACCATGCAGACAAGGAGTCATTGGCTGTGGGGAGTGAATTGCTGGTCTTTGGTAGGGAATTGATGGATTTTGCCATTTGGAAGTACAGTTTGATTTGTCGTGGTTGGGTGAAGTGTCGGGAGATGAACCGGCCTCGTTGCTTGTTCGCATCAAGCAGTCTTGGTTCAATTGCTATTGTTGCTGGTGGAAGTGATAAATATGGAAATGTTTTAGAATCAGCAGAGTTGTATGACTCTTCTTCAGGTACATGGGAACTGTTACCAAACATGCATACACCACGTAGATTGTGCTCTGGTTTTTTTATGGATGGCAAATTCTATGTGATTGGTGGTATGTCAAGTCCAACTGTTTCATTGACTTGTGGGGAGGAGTATGATCTTAACACAAGAAAATGGCGGAAAATAGAGGGTATGTATCCATATGTTAATGGTGCTGCTCAGGCACCTCCACTTGTGGCAGTTGTGGATAATCAGTTGTTTGCAGTTGAGCATCTTACCAACATGGTGAAGAAATATGACAAGGAAAAGAACACCTGGAATGAATTGGGAAGGCTTCCAGTCCGTGCTGATTCTTCTAATGGATGGGGCCTGGCTTTCAAGGCTTGTGGAGACAAACTTCTGGTTGTAGGTGGACAAAGGGGTCCAGAAGGTGAAGCTATTGTACTGAATTCATGGTGTCCTAAAACCGAGGTCAAAAACGGAACCATAGATTGGCAGGTACTTGGTGTGAAGGAGCATGTTGGGGTGTTTGTGTACAATTGTGCTGTTATGGGTTGGTCTGGTGAGATGCTTTTAGATTGA 1191 0.4198 MTKKIRLNFSLQEDEDKVDSFVKLDAKEGVDDGFSRIEPNDSLLPGLIDDVALNCLAWVSRSDYASLACINKRYNLLIKSGYLSGLRKKLGIVELEHLVYLVCDPRGWEAFDPKRNRWITLPKIPCDECFNHADKESLAVGSELLVFGRELMDFAIWKYSLICRGWVKCREMNRPRCLFASSSLGSIAIVAGGSDKYGNVLESAELYDSSSGTWELLPNMHTPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYDLNTRKWRKIEGMYPYVNGAAQAPPLVAVVDNQLFAVEHLTNMVKKYDKEKNTWNELGRLPVRADSSNGWGLAFKACGDKLLVVGGQRGPEGEAIVLNSWCPKTEVKNGTIDWQVLGVKEHVGVFVYNCAVMGWSGEMLLD* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00939 396 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 40 388 - -
Rops3g00939 396 Pfam Kelch motif 223 268 IPR006652 GO:0005515
Rops3g00939 396 Pfam Kelch motif 175 220 IPR006652 GO:0005515
Rops3g00939 396 SMART kelc_smart 187 234 IPR006652 GO:0005515
Rops3g00939 396 SMART kelc_smart 235 287 IPR006652 GO:0005515
Rops3g00939 396 SUPERFAMILY Kelch motif 107 355 IPR015915 GO:0005515
Rops3g00939 396 FunFam F-box/kelch-repeat protein SKIP11 89 373 - -
Rops3g00939 396 Gene3D - 99 377 IPR015915 GO:0005515
Rops3g00939 396 CDD F-box_AtAFR-like 43 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00939 Rops-Chr3 11970588 11972740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00939 38 266 Miscellaneous Gene Families AT4G33900 26.638 6.83e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00939 - - gmx:100792139 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00939 3 11970588 11972740 Rops3g00939 3 11970588 11972740 ECH