Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00907 ATGTGCTTTAACTCTCATTATTCAACTAAGGCTCCTTCAAGGTCTTATAGAAGAAGAGCTCGTAAAAGGTTATTGAAATCCTCCAAGCCTACCCTTAACCAAGCTCAATTTCAGTTGGCACAGTCTCAACTTCCTCCTAGGTTCACTCCTGAAGAACTATGCAAGGTGATTGCTCTTCAAGTTGACCCTTTAGTTTGCTTAGAATTGTTTCATTGGGCATCTCAACAGCCTCGGTTTCGGCATGATGTGTCCACATTTCATGTCACCATTAAGAAGCTTGGTGATGCAAAGATGTACCAAGAAATGGATGACATTGTGGACCAATTGCTTGGAGTTCCATTTCTTGGTTCAGAGGCATTGTTCAACATGATTATATATTATTTTACTGAGGCCAGGAAGTTGACTAGAGCTGTGAATGTTTTCAAGCACATGAAAAGTAGGAAACATTTGAATTGCAGTTTCAGGCCTTCTATTAGAACCTATAATATTCTTTTTGCTGCACTTTTGGGTAGAGGAAACAACTCCTATATAAACCATGTGTATATGGAAACTATTAGATGCCTGTTCAGGCAAATGGTCAACGATGGGATAGAACCTGATATTTTTTCATTAAATTCTATGATAAAAGGTTATGTGCTTTCTCTTCATGTTAATGAGGCATTGAGGATATTTCATCAGATGGGAGTGGTTTATAAATGCCAGCCCAACTCTTTAACCTATGATTACTTGATTCATGGGTTGTGTGCCCAAGGAAGAACAGAGAATGCCAAAGAATTATGTCATGAAATGAAGACCAAAGGTTTCATCCCAAATAGTAAATCTTATAATTCGCTTGTCAATTCTTTGGCACTTGGTGGAGAGGTTGAGGAGGCAGTAAATTATCTGTGGGAGATGACTGAAAAGCAGAGGTCAGTTGATTTTATTACGTATAGGACTGTACTGGATGAGATATGTAGAAGAGGAAGAGGTCAGGAGGCCATGAGGTTTCTGCAGGAGTTGCAAGAGAAGGACCTTGTAGATGGGCATACTTACAGGAAGCTTCTTTATGTGCTTGAGGATGACTACGGGAATTCAGTGAGCAGAATTGATTCAGGTCCAACCTCGACGTCACCTGGAAACTCTTGTTCTTGCCTTGCATTCCGTGCCACACCAGAAAAAAATCTAACCTCCACTTCTTGCAATGAAAGATGGTGCCTGGAATGTACATGGGAGGGTGAGTCTAAAGCATTAGCTTAG 1236 0.4037 MCFNSHYSTKAPSRSYRRRARKRLLKSSKPTLNQAQFQLAQSQLPPRFTPEELCKVIALQVDPLVCLELFHWASQQPRFRHDVSTFHVTIKKLGDAKMYQEMDDIVDQLLGVPFLGSEALFNMIIYYFTEARKLTRAVNVFKHMKSRKHLNCSFRPSIRTYNILFAALLGRGNNSYINHVYMETIRCLFRQMVNDGIEPDIFSLNSMIKGYVLSLHVNEALRIFHQMGVVYKCQPNSLTYDYLIHGLCAQGRTENAKELCHEMKTKGFIPNSKSYNSLVNSLALGGEVEEAVNYLWEMTEKQRSVDFITYRTVLDEICRRGRGQEAMRFLQELQEKDLVDGHTYRKLLYVLEDDYGNSVSRIDSGPTSTSPGNSCSCLAFRATPEKNLTSTSCNERWCLECTWEGESKALA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00907 411 Pfam PPR repeat 308 337 IPR002885 -
Rops3g00907 411 Pfam PPR repeat 203 227 IPR002885 -
Rops3g00907 411 Gene3D Tetratricopeptide repeat domain 177 264 IPR011990 GO:0005515
Rops3g00907 411 Gene3D Tetratricopeptide repeat domain 265 339 IPR011990 GO:0005515
Rops3g00907 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Rops3g00907 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Rops3g00907 411 Pfam PPR repeat family 235 283 IPR002885 -
Rops3g00907 411 PANTHER ATPASE EXPRESSION PROTEIN 3 24 349 - -
Rops3g00907 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Rops3g00907 411 Gene3D Tetratricopeptide repeat domain 20 176 IPR011990 GO:0005515
Rops3g00907 411 NCBIfam pentatricopeptide repeat 239 271 IPR002885 -
Rops3g00907 411 NCBIfam pentatricopeptide repeat 203 236 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00907 Rops-Chr3 11610829 11613609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00907 121 348 Glycosyltransferase AT1G05670 24.715 2.04e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00907 - - gmx:102666460 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00907 3 11610829 11613609 Rops3g00907 3 11610829 11613609 ECH