Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00906 ATGCCATCAAACACAGTTATGGGAAATTTAACCGCCCTTTTCCTCTTGCTCCTTGTTCTTTGCCTTGGCGTGGCCATGACAATTAGCTTTCCTGAAGATGAAGAAGGTTGGAGGATAGAGTTGGAAAAGAGAGGGGAGAGGAGTTCAAACTCATCAAGCAAATTGTTCTTGTTGCAAAACTCTAAGAGTGTGGCTAAGACTGATGCAGGGGAAATGAGAGTACTAAAAGGCTTTGAGAGTAAGATTTTGGATAGGGGCATGCACATTGGCTTCATCACTATGGAACCAAAGTCCTTGTTCATTCCTCAATACCTTGACTCCCATTTGATCATATTCATCCGTAGAGGGGAAGCAAAGTTGGGATTCATATATGGAGATGATCTATCTGAAAGGCGATTGAAGACAGGGGATGTGTATGTAGTTCCAGCTGGTTCTGCATTCTATTTGGTGAATACAGGAGAGGGTCAGAGACTTCACATCATTTGCAGCATTGACCCCTCTACCAGCTTGGGAGAAGATACCTTCCATTCCTTCTATATTGGTGGAGGAGAAAAATCAGAATCAGTGCTTGCTGGATTTGAGCCTGAGATCCTTAAAACTGCATTTAATGAATCAAAAAGGGAGCTAAAGAAAATTTTCAGCAAACGACTAGATGGGCCAATTGTGTATGTGGATGATTCTCATGCCCCTAGCCTATGGACCAAATTCCTTCAACTGAAGAAACAAGACAAAGTGCAACACCTGAAGAAAATGGTGCAAAGCCAAGAAGAACACAATGAAGAAGAAGAAGAAGAAGAGCAGCAAACAAGTTGGTCATGGAGGAAGCTCTTGGAAACTGTATTTAGAAAAGACAACAATAAGATAGAGAACAATGGCGACGCTGATTCCCCTTACAACCTCTATGACAGAAAACCTGATTTCAAAAACGCTTATGGTTGGAGCAGTGCTGTGGATGGAGGCGATTATCCTCCACTCAAAATAGTTGACTTTGGTGTTTTTCACGTCAATCTCACAGCGGGATCAATGATGGCACCTCATGTGAATCCAAGGGCAACAGAGTATGGCATAGTGTTGAAGGGTAATGGTAGAATTCAGATAGTATTTCCAAATGGAACCAATGCAATGGACACTGAAATCAAACAAGGGGATGTGTTCTTTGTACCAAGATTCTTCCCTTTTTGTCAAATAGCATCAAGGAATGGACCCTTAGAGTTCTTTGGGTTCACCACCTCAGCTAGGAGGAACAGGCCACAGTTTCTGATGGGTGCTGTGTCTATTCTTAGGACCATGATGGGACCTGAGCTTGCAGCTTCATTTGGGGTGAGTGAGGATACTATGAGGCATGTGGTTGATGCTCAACATGAGGTAGTAATAATGCCCTCAACATGGGCTGCACCAGGAGATGTAGAGATGTAG 1416 0.4308 MPSNTVMGNLTALFLLLLVLCLGVAMTISFPEDEEGWRIELEKRGERSSNSSSKLFLLQNSKSVAKTDAGEMRVLKGFESKILDRGMHIGFITMEPKSLFIPQYLDSHLIIFIRRGEAKLGFIYGDDLSERRLKTGDVYVVPAGSAFYLVNTGEGQRLHIICSIDPSTSLGEDTFHSFYIGGGEKSESVLAGFEPEILKTAFNESKRELKKIFSKRLDGPIVYVDDSHAPSLWTKFLQLKKQDKVQHLKKMVQSQEEHNEEEEEEEQQTSWSWRKLLETVFRKDNNKIENNGDADSPYNLYDRKPDFKNAYGWSSAVDGGDYPPLKIVDFGVFHVNLTAGSMMAPHVNPRATEYGIVLKGNGRIQIVFPNGTNAMDTEIKQGDVFFVPRFFPFCQIASRNGPLEFFGFTTSARRNRPQFLMGAVSILRTMMGPELAASFGVSEDTMRHVVDAQHEVVIMPSTWAAPGDVEM* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00906 471 Gene3D Jelly Rolls 45 237 IPR014710 -
Rops3g00906 471 Pfam Cupin 64 205 IPR006045 -
Rops3g00906 471 Pfam Cupin 298 445 IPR006045 -
Rops3g00906 471 Coils Coil 244 268 - -
Rops3g00906 471 CDD cupin_7S_vicilin-like_C 305 455 - -
Rops3g00906 471 SMART Cupin_1_3 298 447 IPR006045 -
Rops3g00906 471 SMART Cupin_1_3 56 210 IPR006045 -
Rops3g00906 471 CDD cupin_7S_vicilin-like_N 64 232 - -
Rops3g00906 471 PANTHER OS03G0336100 PROTEIN-RELATED 13 461 - -
Rops3g00906 471 SUPERFAMILY RmlC-like cupins 63 457 IPR011051 -
Rops3g00906 471 Gene3D Jelly Rolls 290 462 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00906 Rops-Chr3 11596498 11599500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00906 52 469 Miscellaneous Gene Families AT2G18540 30.876 1.80e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00906 - - gmx:547942 613.994