Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00894 ATGGCGGCGTCAAGAATCATAGCCCATCCTCACTATGCCGTCCGTCAATCTTCGCCGTTTGATGCCGTGAATTCACCGCCTTCCGTTAACCTTAAAACTCACCCAAAACGACACCGTAACCTCAGCATTCGCGCTTCCCTTCGTGGCCACAAGGAGAACGATCTCAACGACACAGTGCATTCTGTTGAATTGCGAATCAACCCTGACGACTTCCCAAACGACGTCGTTTCCAAAGATCCACTCGCTCTTCCGCGGCCTTTGTCTTCGAATCAGTTCTCTGGTTCAGTTCCTGATGGTTCACGCCTTCGTGTTGCATATCAGGGGGTGCGTGGTGCTTATAGTGAGTCAGCGGCACAGAAGGCATACCCAAATTGTGAAGCTGTGCCTTGTGAACAATTTGACACCGCTTTTGAAGCTGTTGAAAGGTGGCTCGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGCATCCATAGAAATTATGACCTTTTACTACGGCACAGGTTACATATAGTAGGAGAAGTAAAATATGCAGTCCATCATTGTTTGATGGTAAACCATGGTATTAAACTTGAGGATTTGAAGCGGGTTCTTAGTCATCCACAGGCTCTTGCACAATGTGAGAACACACTCACAAGGTTGGGCTTGGTCAGAGAAGCAGTTGATGATACAGCCGGTGCTGCAAAGCATGTTGCCTTCCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCTGCAAAGATCTATGGCTTGAATATACTTGCAGAAGGCATTCAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATCATTCCAGGCACAGATAGGCCATTTAAGACAAGCATAGTTTTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAGGCCCTTGCTGTTTTTGCTTTGCGTCAAATTAATCTCACTAAGATTGAAAGTCGTCCCTTACGGAATCAACCCCTACGAGCATCTGATGATTACAACAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCGTCAATGGCGGATCAGAGTGCACAAAATGCCCTAAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGTTATCCAGTGGACGCTATGCCATGA 1155 0.4554 MAASRIIAHPHYAVRQSSPFDAVNSPPSVNLKTHPKRHRNLSIRASLRGHKENDLNDTVHSVELRINPDDFPNDVVSKDPLALPRPLSSNQFSGSVPDGSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVHHCLMVNHGIKLEDLKRVLSHPQALAQCENTLTRLGLVREAVDDTAGAAKHVAFHKLQDAGAVASSAAAKIYGLNILAEGIQDDSDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRASDDYNKYFDYLFYVDFEASMADQSAQNALRHLKEFATFLRVLGSYPVDAMP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00894 384 FunFam Arogenate dehydratase 285 382 - -
Rops3g00894 384 Pfam Prephenate dehydratase 104 280 IPR001086 GO:0004664|GO:0009094
Rops3g00894 384 FunFam Arogenate dehydratase 98 185 - -
Rops3g00894 384 FunFam Arogenate dehydratase 186 266 - -
Rops3g00894 384 CDD PBP2_Ct-PDT_like 103 280 - -
Rops3g00894 384 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 51 382 - -
Rops3g00894 384 CDD ACT_CM-PDT 290 379 - -
Rops3g00894 384 Gene3D - 187 266 - -
Rops3g00894 384 ProSitePatterns Prephenate dehydratase signature 1. 254 276 IPR018528 GO:0004664|GO:0009094
Rops3g00894 384 ProSiteProfiles ACT domain profile. 292 379 IPR002912 -
Rops3g00894 384 SUPERFAMILY ACT-like 273 380 IPR045865 -
Rops3g00894 384 Gene3D - 285 382 - -
Rops3g00894 384 ProSitePatterns Prephenate dehydratase signature 2. 318 325 IPR018528 GO:0004664|GO:0009094
Rops3g00894 384 Gene3D - 98 186 - -
Rops3g00894 384 SUPERFAMILY Periplasmic binding protein-like II 103 284 - -
Rops3g00894 384 ProSiteProfiles Prephenate dehydratase domain profile. 103 278 IPR001086 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00894 Rops-Chr3 11422494 11426697 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00894 K05359 - gmx:100787387 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00894 3 11422494 11426697 Rops3g00894 3 11422494 11426697 ECH