Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00884 ATGCCATCATCCAAACAGAGCCTTACTTTGCCTTCTGTCTCTTTTAAAAGACACCCTGTGGTTTTTCCTTACCTTTCTTACCCTTTTGCGTTTTCTCTCTCTTCTTCTTCTTCTTCTTCTCTGGCATTGTGTTATCGTGCGCTTCTCAAACAATCTCCTCCTCACAGTTTCGTCTTCTTCTCGATCTCACCACTTGCAATCATGAGTGACGGAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGCAAATGTGGTTATGAGATCTGTGTCTGGTGTTGGCACCACATAATGGACATAGCTGAGAAGGATGACACCGAGGGGCGATGCCCCGCGTGTCGTTCTCCTTATGATAAGGAGAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAATTCATTTGGAGAAAAAAATGAAGAATCAGAAAGCAAAATCTAAATCTTCTGATGGAAGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGGAACCTTGTTTACATAGTTGGATTGCCTCTCAACCTGGCAGATGAAGATCTTCTCCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCGATGTCTCGGACAGCAGCTGGTGTCATTCAACAGTTTCCAAATGATACTTGCAGTGTATATATTACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGATGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGGAATGTGCCTTGCAGCAACCCTGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTTACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAACAAATCACTGGTGCCACAATCAATATGCAACGGCGGTCAGGGAGTGTATTACCTCCTCCAGTGGATGATTGCATGAATAATTCTTCAGGGCCCATTGTGAAAAATGCTCCAAGTAATTCTGTCAGCACTGTAAGAGGTTCACCTCCAAATGGAATCTGTGGGAGACATGTAGCTCTTCCTGCTAGTGCTGCATGGGGTACCCAGGCTACAAATTGTCATCCCCCTGTTGGAGGAGGTCTATCATATCAAAATGGGCCGTCCAAGCCAAAACCTGATATAGTCAGCAGCACTCTAGCCTTTTCCGCTGCTGTTACAGGCACAAATCAGGCCTCTGCATTGCACTGTGATATTACAAAGAGGCCACCATCAAGTGATGGGAGTCATAGTACAATACCTAGAGTGAAAAGTGAATTGGTGAAACCTGTTAAAAAATACAATAGTATGGACAGTCTCACTAGTGCAGGTGAAAAAACTTCAACTTCTGATGTTTCTCCTGTGCCTGTTAATTTGAACAGCCAGTTGTCTTCTCTACCATCGCCCCAAGATAGTGATAGAGGCAGTTGTACTATAGCAAACACAATAAATTCTACTAACTGTACTGGACAATCTTTTAACTCTGGTCCTGAGGAAGCAATGACTGCTACCAATGAAGAGATTCAGAATTTGTCTAGTGATTTGTCCTTGATTAACATTGACAGACATACTGCAAATGAACACTATGGGGTAACCAAACCTAGTAGCCCGCATACTGATTATGCCGTGATTAAATCTCCTCAAATTCAAGGATCACAATATAATGATGACAGATTCAAAGATGCTGTAACTACAAATGCGGCTGGTAAATCTTCTACATCTGACAATGGGGTTTGTAATTCATGGGAACAGTGCGATGGGAGATTGGATTCTCAATCTCAAGTAGTATCAGATCCTGCTGAAACTGAAGATGATGTAACCTCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTCTTTGCCATTCTTATTTGCCAAAGTCAACAAGCTTCCTTCATGCATCAAACCATTCTAGCTCTCATCTGATGCAGTATGGTGAACCTTGTACTGCTGTAAATGCTGGTTCTGTATCTCCTGATGATAGAGTTCGGGATGCATCTATATTGCATGCGTCTAGCATATTATGTAATGGCTACCCTGAGAAATTGGTCAGCAGAAGCTCTTATGGTTTACTTCATGATGAAAGAAATGGGCAAAGCATTGGAAGATTGGTTGGTGAAGCAGTTAATTCTGGATGTGATGCTGCAATTGATACTGGTGAAAGTAGTATAATTTCAAATATCCTGTCCATGGATTTTGATGCCTGGGATGACTCGCTAACATCACCTCATAATTTAGCTAAGTTGTTGGGCGACAATACTGATGACCAGTCTGGTCCTTTAAAAAAATCTGGTTCTTGGAAAGTTCAAAGTAATAATCAGTCAAGGTTCTCTTTTGCGAGGCAGGAGGAATCCAAATTCCAGACTTTTGATGTACATCCATCTTATGGTGTCAGCCAGCAACAGCAAAAGAGCCACACACACTTCCAGAATTTTGCAGAAAGAGACTTGTATTTGGATAAGTTGGGCATTGCAAATGGCTTTCCTACCAGTAACTTTGGGGAAGCTGAAAATATAGGCAGTGTTCATTCTATTGCTTCTTTCAATAAATTTCCTGCCATTTCAAGAGCACAAGTGTCAGCTCCACCAGGATTTTCAGTTCCAAGCAGGCTGCCGCCACCTGGTTTTTCTTCTCACGAGAGGGTTGAACCTGCTTTTGACTCCATATCTGGGAATTCATTACTGGACCATTCTTCCTATTCGAGAAATTCATATCAGACGCTCTCAGCTGGAAATATTGGTGGTGCTGGTGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGCAAGGGGAGACTTCAAGGTGCACAAAACAGCCAAGCACTGGACATTCGATCAAATTTCATGCCACAATTAAATTACTTTGAAAATGATTCCAGACTGCAATTATTGATGCAAAGATCTCTCTCACAGCAGCAAAACCATAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCATATGGTATTTCTTCAAGGTTAGATCAATCACAAGTCAGTAATCTAGCCCCATTCTCACAGCTGTCTTTGCAGCAGTCTACAAATGCAATCTTGTCAAATGGCCAATGGGATGGATGGAATGAGGATGGTGGAACTGACTCGACTTGGTCTATTGGGCTACCTAATGATGAAACTACCAAGTGTAATTTATGGCTGCAGTTGTTCTGGATTCGCGGAAATGAGCTGTGTTGGGATTTTAAGATATCAAGTGTCAATGCTAACGTGATCAAACTAGCCAGTTTAACTACCCTTTTGGGATGA 3330 0.4168 MPSSKQSLTLPSVSFKRHPVVFPYLSYPFAFSLSSSSSSSLALCYRALLKQSPPHSFVFFSISPLAIMSDGGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDIAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEIHLEKKMKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLDGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATINMQRRSGSVLPPPVDDCMNNSSGPIVKNAPSNSVSTVRGSPPNGICGRHVALPASAAWGTQATNCHPPVGGGLSYQNGPSKPKPDIVSSTLAFSAAVTGTNQASALHCDITKRPPSSDGSHSTIPRVKSELVKPVKKYNSMDSLTSAGEKTSTSDVSPVPVNLNSQLSSLPSPQDSDRGSCTIANTINSTNCTGQSFNSGPEEAMTATNEEIQNLSSDLSLINIDRHTANEHYGVTKPSSPHTDYAVIKSPQIQGSQYNDDRFKDAVTTNAAGKSSTSDNGVCNSWEQCDGRLDSQSQVVSDPAETEDDVTSFDNQRLKDPEVLCHSYLPKSTSFLHASNHSSSHLMQYGEPCTAVNAGSVSPDDRVRDASILHASSILCNGYPEKLVSRSSYGLLHDERNGQSIGRLVGEAVNSGCDAAIDTGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDNTDDQSGPLKKSGSWKVQSNNQSRFSFARQEESKFQTFDVHPSYGVSQQQQKSHTHFQNFAERDLYLDKLGIANGFPTSNFGEAENIGSVHSIASFNKFPAISRAQVSAPPGFSVPSRLPPPGFSSHERVEPAFDSISGNSLLDHSSYSRNSYQTLSAGNIGGAGDIEFMDPAILAVGKGRLQGAQNSQALDIRSNFMPQLNYFENDSRLQLLMQRSLSQQQNHRFSEIGNTFSQLGDSYGISSRLDQSQVSNLAPFSQLSLQQSTNAILSNGQWDGWNEDGGTDSTWSIGLPNDETTKCNLWLQLFWIRGNELCWDFKISSVNANVIKLASLTTLLG* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00884 1109 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 263 IPR000504 GO:0003723
Rops3g00884 1109 CDD mRING-HC-C4C4_CNOT4 75 125 IPR039515 -
Rops3g00884 1109 MobiDBLite consensus disorder prediction 454 497 - -
Rops3g00884 1109 SMART rrm2_1 178 259 IPR003954 GO:0003676
Rops3g00884 1109 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 178 259 - -
Rops3g00884 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 144 IPR013083 -
Rops3g00884 1109 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 68 1053 IPR039780 GO:0004842|GO:0030014
Rops3g00884 1109 Pfam RING/Ubox like zinc-binding domain 76 128 - -
Rops3g00884 1109 MobiDBLite consensus disorder prediction 426 497 - -
Rops3g00884 1109 CDD RRM_CNOT4 172 271 IPR034261 -
Rops3g00884 1109 Gene3D - 178 259 IPR012677 -
Rops3g00884 1109 ProSiteProfiles Zinc finger RING-type profile. 76 124 IPR001841 -
Rops3g00884 1109 SUPERFAMILY RING/U-box 68 133 - -
Rops3g00884 1109 SUPERFAMILY RNA-binding domain, RBD 171 257 IPR035979 GO:0003676
Rops3g00884 1109 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 257 IPR000504 GO:0003723
Rops3g00884 1109 MobiDBLite consensus disorder prediction 609 630 - -
Rops3g00884 1109 SMART rrm1_1 178 259 IPR000504 GO:0003723
Rops3g00884 1109 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 68 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00884 Rops-Chr3 11338365 11347902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00884 K10643 - gmx:100813427 1568.9