Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00861 ATGTCGGGGTTACTTAATTCTTCTTTGAACGGATCTGCTTCAAATCTTCCAGACGGTGCTGGGCGATCGTTTGCTACATCATTCTCTGGTCAGTCTGGTGCAGCCTCCCCAATTTTTCATCACACTGGAGCTATTCAAGGGTTGCACAATATTCATGGGAGCTTTAATGTTCCCAATATGCCTGGTACACTGACATCAAGAAACTCAACGATAAATAATGTTCCATCTGGAGGTGTTCAACAACCCACGGGAAGCCTTTCTAGTGGAAGATTTGCATCCAACAATCTCCCTGTTGCACTGTCACAGCTATCTCATGGCAGCTCCCATGGACATTCAGGAGTCACCAATAGAGGAGGATTGGGAGTAAACCCAATTTTGGGAAATGCAGGTCCTCGAATCACAAGTTCTGTGGGAAACATGGTTGGAGGGGGGAATATTGGAAGGACTGGTGGAGGGTTGTCTCTGCCTGGTCTCGCTTCTCGTCTAAATTTGAATGCAAACAGCGGATCTGGTGGTTTAGGTATGCAAGGACAGAATCGATTGATGAGTGGCGTGCTTCCACAAGGATCTCCGCAGGTAATTTCAATGCTAGGAAATTCTTATCCTAGTGCTGGAGGTCCACTTTCCCAAAGTCATGTTCAAGCAGTAAGTAATTTGAACTCTATGGGGATGTTGAATGATGTGAATTCCAATGACAGTTCACCTTTTGACATCAATGACTTCCCTCAACTGACAAGTCGCCCTAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGGTTCTTTACGGAAACAGGGTCTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGACTTCCCAGCTTTACCTGGATTCAAAGGTGGTAATGCAGATTATGGCATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTGCCAATGATGCAATCTCAGCATTTCTCTATGGGGAGGTCTGCTGGTTTCAGCTTGGGGGGAACATATTCATCACATCGTGCACAACAGCAACAACAGCATAGTCCTTCAGTCAGTAATGGCAGTGTCTCGTTTTCATCTGTAAACAACCAGGATCTTCTCCATCTTCATGGATCAGATATTTTTCCATCTTCACATTCAACGTATCATTCACAGACCAGTGGACCTCCTGGCATCGGTTTAAGGCCTTTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCATACGACCAGCTCATCCAGCAATATCAACAGCAGCAGAACCAGTCCCAGTTCCGCCTTCAAATGTCTGCTGTAAATCAGTCTTTTAGGGATCCGGGCATGAAGTCTATGCAAACTGCACAATCTACACCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTAATCAGGATGAGTGATCCTGACCTGACATCTCTTGCTCTTGGAATTGATCTCACTACACTTGGGTTAAATTTGAATTCATCAGAAAATCTTCACAAGACTTTTGGATCTCCATGGGTTGAAGAACCAGCTAAGGGTGATCCAGAGTTTAATGTGCCACAATGTTATTATGCTAAACAGCCACCTACTCTACATCAAGGTTATTTTGCAAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCGAAAGATGAAGCACAATTATATGCCGCAAATGAGCTCAACAACAGAGGTTGGTTTTATCACATAGAGCTTCGACGTTGGTTGATAAGGGTTCCCAACATGGAGCCGCTGGTTAAAACAAACACATACGAGAGAGGATCTTATCACTCTTTTGAGCCAAACTCATTCGAAACAGCCCGCAAGGATAATTTTGTTCTTCATTATGAAATGGTTGAAAAGAGACCTCATTTGCCTCAACATTGA 1869 0.4355 MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASPIFHHTGAIQGLHNIHGSFNVPNMPGTLTSRNSTINNVPSGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVTNRGGLGVNPILGNAGPRITSSVGNMVGGGNIGRTGGGLSLPGLASRLNLNANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQAVSNLNSMGMLNDVNSNDSSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYGMDMHQKEQLHDNAVPMMQSQHFSMGRSAGFSLGGTYSSHRAQQQQQHSPSVSNGSVSFSSVNNQDLLHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQQQNQSQFRLQMSAVNQSFRDPGMKSMQTAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWVEEPAKGDPEFNVPQCYYAKQPPTLHQGYFAKFSVETLFYIFYSMPKDEAQLYAANELNNRGWFYHIELRRWLIRVPNMEPLVKTNTYERGSYHSFEPNSFETARKDNFVLHYEMVEKRPHLPQH* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00861 622 Gene3D - 441 622 IPR038635 -
Rops3g00861 622 MobiDBLite consensus disorder prediction 59 90 - -
Rops3g00861 622 MobiDBLite consensus disorder prediction 224 261 - -
Rops3g00861 622 PANTHER CCR4 NOT-RELATED 48 616 IPR040168 GO:0030015
Rops3g00861 622 MobiDBLite consensus disorder prediction 325 356 - -
Rops3g00861 622 Pfam NOT2 / NOT3 / NOT5 family 491 612 IPR007282 GO:0006355
Rops3g00861 622 FunFam probable NOT transcription complex subunit VIP2 isoform X1 441 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00861 Rops-Chr3 10620364 10630122 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00861 K12605 - gmx:100807026 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00861 3 10620364 10630122 Rops3g00861 3 10620364 10630122 ECH
Rops7g00733 7 9827015 9838800 Rops3g00861 3 10620364 10630122 PCT