Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00858 ATGGAAACACCAACTGTACAGCCACAAGCTGCACCAACAAGCACCCCTAGGAAGAAAATGACTAAACAATTGACAGGGAAAAGGGAGGATACTCCTTTACACTCTGCAGCAAGAGCAGGAAATATGACTGCCATGAAGGACACACTTAGTGGTACTGAAAAAGGTGAACTGCGTGAATTATTGGTAAAGCAGAACCATGCTGGAGAAACAGCACTTTATGTTGCTGCTGAATATGGTTATGTTGATATAGTTAGGGAGATGATTCAATATTATGATCTTGCCGATGCTGGAATTAAAGCTAGAAATGGTTTTGATGCACTCCACATTGCTGCCAAACAAGGGGATTTAGATGTAGTGAAGATCCTAATGGAAGCTCATCCTGAATTGTCAATGACTGTGGATCCATCAAACACCACAGCCTTGCACACAGCTGCAACACAAGGGCACATTGATATAGTGAAATTTCTATTAGAAGCAGGTAGTAGCTTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTCTGCATTCTGCTGCAAGAAATGGACATTTGGAGGTTGTGAAAGCACTTCTAGAGAAAGAGCCTGGTGTTGCAACTCGGACTGATAAAAAGGGACAGACAGCACTTCACATGGCGGTGAAGGGACAGAGTCTTGAGGTGGTAGAGGAGTTGATAAAGGCAGATCCCTCATCAATAAACATTGTTGATAATAAGGGTAACACGGCATTGCATATAGCAACCAGGAAGGGCAGAACTCAGATTATTAAGTTGTTACTTGGACAGAAGGAAACAAATGCCATGGCGGTTAATAGATCTGGTGAAACTGCACTAGACACTGCTGAGAAAACTGGGAATTCTGATGTTAAAAACATTCTGATAGAACACGGTGTTCAAAGTGCCAAAGCCATAAAGGCTCAGCCAACGACACCAGCAGCCCGTGAGTTGAAACAAACAGTAAGTGACATAAAACATGAAGTCCATTACCAATTGGAACACACACGCCAAACCAGAAAAAGTGTTCAAGGCATTGCCAAACGTCTCAACAAAATGCATGCTGAAGGACTAAACAATGCAATAAACTCCACAACTGTGGTTGCAGTCCTCATTGCCACAGTAGCATTTGCTGCTATTTTCACAGTCCCTGGCCAATTTGTTGATAATCCAAAAGATATTCCTCAAGGGATGTCCCTTGGTGAAGCAAATATAGCCCGGCAAGCTCCATTTATCATTTTCTTTGTCTTTGATTCCTTTGCCCTCTTCATTTCTCTAGCTGTTGTGGTGGTGCAAACCTCAGTTGTGGTTATAGAAAGGAAAGCAAAGAAGCAAATGATGGCCATCATTAACAAGCTAATGTGGTTGGCTTGTGTAAATATTTCAGTGGCATTCTTGGCTTTGTCATTTGTAGTGGTGGGAAAGGATCATGAGTGGCTTGCAATTGGAGTTACTATTATAGGGACAACTATAATGGCTACAACCTTGGGAACCATGAGTTATTGGGTCATTAGGCATCGTATTGAGGCCTCAAATTTGAGGAACATTCGGAAATCTTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGTGTCAGTTATGTCAGATTCTGAGCTACTAAACAATGAGAGAATGTATGCGATTTAG 1635 0.4208 METPTVQPQAAPTSTPRKKMTKQLTGKREDTPLHSAARAGNMTAMKDTLSGTEKGELRELLVKQNHAGETALYVAAEYGYVDIVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDVVKILMEAHPELSMTVDPSNTTALHTAATQGHIDIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVVKALLEKEPGVATRTDKKGQTALHMAVKGQSLEVVEELIKADPSSINIVDNKGNTALHIATRKGRTQIIKLLLGQKETNAMAVNRSGETALDTAEKTGNSDVKNILIEHGVQSAKAIKAQPTTPAARELKQTVSDIKHEVHYQLEHTRQTRKSVQGIAKRLNKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDNPKDIPQGMSLGEANIARQAPFIIFFVFDSFALFISLAVVVVQTSVVVIERKAKKQMMAIINKLMWLACVNISVAFLALSFVVVGKDHEWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRNIRKSSMGSRSRSFSVSVMSDSELLNNERMYAI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00858 544 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g00858 544 Gene3D - 166 337 IPR036770 -
Rops3g00858 544 ProSiteProfiles Ankyrin repeat profile. 136 168 IPR002110 GO:0005515
Rops3g00858 544 ProSiteProfiles Ankyrin repeat region circular profile. 170 193 - -
Rops3g00858 544 Gene3D - 10 165 IPR036770 -
Rops3g00858 544 ProSiteProfiles Ankyrin repeat profile. 204 226 IPR002110 GO:0005515
Rops3g00858 544 Pfam Ankyrin repeat 239 265 IPR002110 GO:0005515
Rops3g00858 544 SUPERFAMILY Ankyrin repeat 32 297 IPR036770 -
Rops3g00858 544 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Rops3g00858 544 Pfam Domain of unknown function 353 469 IPR026961 -
Rops3g00858 544 ProSiteProfiles Ankyrin repeat region circular profile. 204 226 - -
Rops3g00858 544 ProSiteProfiles Ankyrin repeat profile. 102 134 IPR002110 GO:0005515
Rops3g00858 544 ProSiteProfiles Ankyrin repeat region circular profile. 238 259 - -
Rops3g00858 544 ProSiteProfiles Ankyrin repeat profile. 238 259 IPR002110 GO:0005515
Rops3g00858 544 Pfam Ankyrin repeats (3 copies) 96 163 IPR002110 GO:0005515
Rops3g00858 544 Pfam Ankyrin repeats (3 copies) 170 233 IPR002110 GO:0005515
Rops3g00858 544 Pfam Ankyrin repeats (3 copies) 21 90 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 67 96 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 102 131 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 28 59 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 136 165 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 204 234 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 272 302 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 170 199 IPR002110 GO:0005515
Rops3g00858 544 SMART ANK_2a 238 266 IPR002110 GO:0005515
Rops3g00858 544 ProSiteProfiles Ankyrin repeat region circular profile. 136 163 - -
Rops3g00858 544 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 16 526 - -
Rops3g00858 544 MobiDBLite consensus disorder prediction 1 35 - -
Rops3g00858 544 ProSiteProfiles Ankyrin repeat region circular profile. 102 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00858 Rops-Chr3 10587996 10591591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00858 11 544 Miscellaneous Gene Families AT1G07710 73.694 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00858 - - gmx:100808971 887.486