Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00856 ATGGATTTTCTCTCTTTACTCTTTGTTGTTCCAACATTGTACTTGTGTTTCATGATCTGGAGGTTGTTTGATCAAAGGAGGGACCAAGAGTGTTATATATTGGATTACCAATGTTATAAGCCAACAGATGATAGAATGCTTAAGACAGAGTTTTGTGGGAAAGTCATCAAAAGGACTGAGAACTTGGGTCTCAATGAGTACAAGTTTCTCCTCAAAGCCATTGTGAGTTCTGGCATCGGGGAACAAACTTATGCACCAAGAAACGTTTTTGATGGCCGTGAGGCAAACCCCACTTTGATGGATGGGATCTTAGAAATGGAGGAGTTCTTCAATGATAGCATTGCCAAGCTTTTTGCCAGGTCAGCAATTTCCCCTTCTGAGATTGATGTCCTTGTGGTTAATATCTCCATGCTAGCTTGTATGCCTTCCTTATCTTCTAGAATAATTAACCTTTACAAAATGAGGGATGACATTAAGGTTTACAATCTCACTGGGATGGGTTGTAGTGCTAGCCTTATATCTTTGGACATTATTAAGAACATTTTCAAGTGCCAAAAGAACAAGTATGCTCTTTTGGTCACTTCAGAGTCTCTTAGTCCAAATTGGTATAATGGCAATGACAGATCAATGATCCTTGCCAATTGTTTGTTCCGTTCTGGTGGCTGTGCCATTCTCTTGACAAATAAAAGGTCCTTAAAGCACAAGGCCATGTTGAAATTGAAGTGCTTGGTAAGGACCCATCATGGTGCAAGAGAAGAGGCCTATGGTTGTTGCATTCAAAAGGAAGATGAGCAAGGTAGGCTTGGTTTTCACCTTGGGAAAACTCTCCCCAAGGCAGCTACAAGGGCTTTTGTTGATAATTTAAGGGTAATATCACCCAAGATTTTGCCAACAAGGGAGTTACTCAGGTTTCTTGTTGTGTCCCTCATTAAAAAATTGAAATTAAGTAATACCCCTAAGTCTGCAAGTGGGGGAACTACTAAATCCCCATTGAACTTCAAAACTGGGGTTGATCATTTTTGCCTCCATACTGGAGGAAAAGCAGTGATTGATGGTATTGGAATGAGCTTGGATCTTAGTGAATATGATCTTGAACCAGCTAGGATGACACTACACCGTTTTGGGAACACATCAGCTGGTAGCCTTTGGTATGTTCTTGGGTACATGGAAGCTAAGAAGAGGCTCAAAAAGGGTGACAGAGTGTTCATGATAAGTTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTATGGGAGGTAATGAGGGATCTGGGAAATGCAAATGTGTGGGACGACTGCATTGATGACTACCCACCAGAATCATTGGCCAACCCTTTCATGGAGAAATATGGTTGGATCAATGAAGTTGAAGATCCAAACACCTGTGAAATCCCAGATTTTCTCAAGGATTAA 1410 0.4099 MDFLSLLFVVPTLYLCFMIWRLFDQRRDQECYILDYQCYKPTDDRMLKTEFCGKVIKRTENLGLNEYKFLLKAIVSSGIGEQTYAPRNVFDGREANPTLMDGILEMEEFFNDSIAKLFARSAISPSEIDVLVVNISMLACMPSLSSRIINLYKMRDDIKVYNLTGMGCSASLISLDIIKNIFKCQKNKYALLVTSESLSPNWYNGNDRSMILANCLFRSGGCAILLTNKRSLKHKAMLKLKCLVRTHHGAREEAYGCCIQKEDEQGRLGFHLGKTLPKAATRAFVDNLRVISPKILPTRELLRFLVVSLIKKLKLSNTPKSASGGTTKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSAGSLWYVLGYMEAKKRLKKGDRVFMISFGAGFKCNSCLWEVMRDLGNANVWDDCIDDYPPESLANPFMEKYGWINEVEDPNTCEIPDFLKD* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00856 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops3g00856 469 Gene3D - 69 419 IPR016039 GO:0016746
Rops3g00856 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Rops3g00856 469 PANTHER 3-KETOACYL-COA SYNTHASE 13 438 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops3g00856 469 SUPERFAMILY Thiolase-like 17 231 IPR016039 GO:0016746
Rops3g00856 469 SUPERFAMILY Thiolase-like 243 420 IPR016039 GO:0016746
Rops3g00856 469 CDD CHS_like 12 417 - -
Rops3g00856 469 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00856 Rops-Chr3 10552660 10554377 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00856 19 465 Acyl Lipid Metabolism Gene Families AT2G28630 72.588 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00856 K15397 - gmx:100809149 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00739 7 9924065 9925471 Rops3g00856 3 10552660 10554377 PCT