Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00846 ATGATATATCGGAGAGCCAAAGCGATTAATCCAAATCAATTGTTCAATGAAGCCCTATCACCTCGACCTCAAAGAGCAACTTCAAAGCTTCGAAATCGAAAGCGCATTCCTTTCATCAAAGAAGTTAAAGAGGTTGAAGACCCAGACGAAGCTTTGTCCCTTTTTCACCGTTACAAGGAAAATGGTTTCAGACACTATTACCCTTCCTATGCTGCATTACTCTACAAACTCGCTCGTTCTAGAAACTTCGAAGCCGTTGAAACCATTCTCAACCACATGAAAGACACTGATATGTACTGCAAAGAGACCCTTTTCATTGCTCTCTTTCAACATTACGGTCCTGAAAGGGCCCTTCAACTCTTTCGCACAATGCCCCAATTCAATTGCGTTCGCACGTTGCAGTCCCTAAATGCACTTCTCAATGTTCTTGTTGATAACCACTGCTTTGACGAGGCTAATGATGTTTTTGGTCGATCCTATGAGATGGGTTTTCGTCCAAACACGGTCACGTTCAATGTAATGATAAAGGGGTGGTTGGCGAAGGGTGAGTGGGGTAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTACAGCCTAGTGTAGTGACTTATAACAGTCTCATTGGGTTCTTGTCTAAAAAGGGTGATTTGGATAAAGCAATGACCTTGCTTGAGGATATGAACCACAAAGGAAAACACGCGAATCAAGTAACTTATGCACTTTTGATGGAAGGCTTGTGCTCTGTGGGAAAGTATGAGGAAGCTAAGAAGCTAATGTTTGATATGGCGTATCGAGGGTGTAAACCTCAGCTGGTCAATTTTTCTGTCTTGATGAATGATCTTGGAAAGAGAGGGAAGATTGAGGAGGCCAAGTCTTTACTCCATGAGATGAAAAAAAGGAGGCTTAAGCCTGATGTTGTAACATACAATATATTGATAAATTATCTTTGCAAGGAAGGTAAGACAGCGGAAGCTTACAAAGTCTTAATTGAGATGCAGATTGGAGGCTGTGAGCCAAATGCTGCTACATACAGGATGATGGTTGATGGTTTATGCCACATTGGGGATTTTGAGTTAGGTCTGAGTGTTTTGAATGCGATGCTAGCAAGTAGACATTGTCCTCGTTCTGAAACATTTAATTGTTTGGTTGTTGGCCTATTGAACTCTGGGAATATTGATGGTGCATGCTTTGTTTTGGAAGAGATGGAGAAGAGAAAGGTAGCGTTTGATTTGGAGAGCTGGGAATCTATAATAAAGAATGCTTGCAATGAGGATACGGGTGCAAGTGAGCTTATGACTATACTTGCATCTCCGTCCATCTAA 1329 0.4169 MIYRRAKAINPNQLFNEALSPRPQRATSKLRNRKRIPFIKEVKEVEDPDEALSLFHRYKENGFRHYYPSYAALLYKLARSRNFEAVETILNHMKDTDMYCKETLFIALFQHYGPERALQLFRTMPQFNCVRTLQSLNALLNVLVDNHCFDEANDVFGRSYEMGFRPNTVTFNVMIKGWLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLSKKGDLDKAMTLLEDMNHKGKHANQVTYALLMEGLCSVGKYEEAKKLMFDMAYRGCKPQLVNFSVLMNDLGKRGKIEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKTAEAYKVLIEMQIGGCEPNAATYRMMVDGLCHIGDFELGLSVLNAMLASRHCPRSETFNCLVVGLLNSGNIDGACFVLEEMEKRKVAFDLESWESIIKNACNEDTGASELMTILASPSI* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00846 442 Gene3D Tetratricopeptide repeat domain 42 110 IPR011990 GO:0005515
Rops3g00846 442 Gene3D Tetratricopeptide repeat domain 111 264 IPR011990 GO:0005515
Rops3g00846 442 NCBIfam pentatricopeptide repeat 239 271 IPR002885 -
Rops3g00846 442 NCBIfam pentatricopeptide repeat 169 202 IPR002885 -
Rops3g00846 442 NCBIfam pentatricopeptide repeat 276 308 IPR002885 -
Rops3g00846 442 NCBIfam pentatricopeptide repeat 136 168 IPR002885 -
Rops3g00846 442 NCBIfam pentatricopeptide repeat 204 233 IPR002885 -
Rops3g00846 442 NCBIfam pentatricopeptide repeat 345 376 IPR002885 -
Rops3g00846 442 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Rops3g00846 442 NCBIfam pentatricopeptide repeat 380 411 IPR002885 -
Rops3g00846 442 Pfam PPR repeat family 166 210 IPR002885 -
Rops3g00846 442 Pfam PPR repeat family 237 283 IPR002885 -
Rops3g00846 442 Pfam PPR repeat family 306 355 IPR002885 -
Rops3g00846 442 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 214 430 - -
Rops3g00846 442 SUPERFAMILY TPR-like 78 331 IPR011990 GO:0005515
Rops3g00846 442 Gene3D Tetratricopeptide repeat domain 337 435 IPR011990 GO:0005515
Rops3g00846 442 Pfam PPR repeat 380 408 IPR002885 -
Rops3g00846 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Rops3g00846 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Rops3g00846 442 Gene3D Tetratricopeptide repeat domain 265 336 IPR011990 GO:0005515
Rops3g00846 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Rops3g00846 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Rops3g00846 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Rops3g00846 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Rops3g00846 442 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00846 24 426 Miscellaneous Gene Families AT4G11690 26.570 3.28e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00846 - - gmx:100776556 736.873