Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00841 ATGGAGATTGATCTTTCACCCCAGTTGGCCAAGAAGGTGTACGGAGACAATGGTGGATCTTATTATGCTTGGTCTCCTTATGAGCTTCCCATGTTGCGTGAAGGGAATATAGGTGCTGCAAAACTAGCTCTTGAGAAGAATGGTTTTGCTCTTCCTCGTTATTCTGATTCTTCTAAGGTTGCATATGTTCTACAAGGAAGTGGAGTTGCTGGAATTGTAGTCCCTGAATCAGAAGAAAAGGTTGTTGCAATTAAAAAGGGTGATGCTTTGGCACTTCCCTTTGGTGTGGTGACATGGTGGTTCAATAAGGAGGAAATTGAATTGGTTGTTCTGTTCCTTGGAGACACGTCAAAAGCACACAAGGCTGGTGAATTCACTGATTTTTTCCTCACAGGTTCCAATGGAATCTTCACTGGATTTTCAGCTGAGTTTGTAGGGAGAGCTTGGGACTTGGAAGAGAAGGATGTGAAGACCCTTGTTGGCAAACAATCAGGCAAAGGCACTGTGAAGCTTGAAGGAAATATCAATCTTCCTGAGCCCAAAGAGGAACATAGGAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGAATGGTGGAAGAGTTGTGGTGTTGAACACCAAGAACCTTCCATTGGTTGGTGAGGTTGGTTTAGGAGCTGACCTTGTGAGGCTTGATGGAAAAGCAATGTGTTCTCCAGGATTCTCTTGTGACTCTGCATTACAGGTTACTTACATTGTTAGGGGAAGTGGTCGTGTTCAGGTTGTTGGTGTGGATGGTCGTAGGGTCTTGGAGACAACTCTAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTCTCAAAGATTGCTGACCCTGATGGAATGGAATGGTTCTCTATCATCACTACCCCTAATCCTATATTTACACACCTGGCTGGAAGTTCTTCAGTGTGGAAGGCTTTATCACCAACGGTTCTGCAAGCTGCTTTCAATGTCGATGCAGGAGTTGAGCAACTCTTCCGTTCAAAGAGGACTGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.4426 MEIDLSPQLAKKVYGDNGGSYYAWSPYELPMLREGNIGAAKLALEKNGFALPRYSDSSKVAYVLQGSGVAGIVVPESEEKVVAIKKGDALALPFGVVTWWFNKEEIELVVLFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSAEFVGRAWDLEEKDVKTLVGKQSGKGTVKLEGNINLPEPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTLKAGNLFIVPRFFVVSKIADPDGMEWFSIITTPNPIFTHLAGSSSVWKALSPTVLQAAFNVDAGVEQLFRSKRTADAIFFPPPN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00841 356 Gene3D Jelly Rolls 197 356 IPR014710 -
Rops3g00841 356 PANTHER OS03G0336100 PROTEIN-RELATED 9 355 - -
Rops3g00841 356 CDD cupin_11S_legumin_N 4 173 - -
Rops3g00841 356 FunFam Glycinin G1 192 356 - -
Rops3g00841 356 SMART Cupin_1_3 195 339 IPR006045 -
Rops3g00841 356 SMART Cupin_1_3 3 157 IPR006045 -
Rops3g00841 356 CDD cupin_11S_legumin_C 198 353 - -
Rops3g00841 356 Gene3D Jelly Rolls 3 196 IPR014710 -
Rops3g00841 356 SUPERFAMILY RmlC-like cupins 15 345 IPR011051 -
Rops3g00841 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Rops3g00841 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Rops3g00841 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Rops3g00841 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Rops3g00841 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Rops3g00841 356 Pfam Cupin 11 156 IPR006045 -
Rops3g00841 356 Pfam Cupin 199 335 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00841 Rops-Chr3 10261756 10264141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00841 35 333 Miscellaneous Gene Families AT2G18540 22.350 1.09e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00841 - - gmx:100782055 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00742 7 9996631 9999296 Rops3g00841 3 10261756 10264141 PCT