Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00820 ATGTCGTCTCAAGCTAGCCTTCTCCTTCAAAAGCAACTCAAAGATCTTTGCAAAAACCCCGTTGATGGCTTCTCCGCTGGTTTGGTTGATGAAAGCAACATTTTTGAATGGAGTGTCACCATAATTGGACCCCCTGATACCCTCTATGAGGGGGGATTTTTCAATGCCATTATGAGTTTTCCACCCAATTACCCAAATAGTCCACCATCAGTGAAATTCACCTCAGAGTTATGGCACCCCAACGTATATCCTGATGGCCGGGTTTGCATATCAATCCTTCATCCTCCTGGTGAGGATCCAAACGGTTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCTAATGTTGAAGCTGCGAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTGGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4391 MSSQASLLLQKQLKDLCKNPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSELWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00820 166 CDD UBCc 17 159 IPR000608 -
Rops3g00820 166 Gene3D Ubiquitin Conjugating Enzyme 1 166 IPR016135 -
Rops3g00820 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 163 - -
Rops3g00820 166 SMART ubc_7 7 164 - -
Rops3g00820 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Rops3g00820 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Rops3g00820 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Rops3g00820 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Rops3g00820 166 FunFam ubiquitin-conjugating enzyme E2 7 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00820 Rops-Chr3 10044257 10050144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00820 11 131 Miscellaneous Gene Families AT3G17000 32.308 2.28e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00820 K10575 - gmx:100500474 311.227