Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00770 ATGCTTGGCAATAACGAGGGTTGTTTCGGTGATGAATTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGTAGACAAGATGCTGATGATCGTGAGAGAGAGCTCAATATTTACAGGAGTGGATCAGCACCTCCAACTGTGGAGGGTTCTTTGAGTGCAGTTGGAGGGTTGTTTGGTGGTGGTGGTGATACTGCTGCTTCTGCTGCTTTTTCTGAGTTTTCAGCGACTAAAGATGTTAATGGGATTGTTTCTGAGGAAGAACTTAGGTCTGATCCAGCTTATCTTCAATACTATTACTCCAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTGTCTAAGGAGGATTGGAGGTTTCAGCAAAGACTTAAAGGTGGAGCTTCAGTTCTTGGTGGAATTGGGGATAGGAGGAAAGTGAACAGGACTGATGATAATGGTGGTAGATCATTGTTTTCGACCCCACCAGGTTTTAACATTAGGAAACAAGATAGTGAGGTGGATAACGAGAAAACAAGAGGTTCTGCTGAGTGGGGTGGGGATGGACTTATTGGTTTGCCTGGCCTCGGGCTTAGGAGCAAACAAAAGAGCCTTGCAGAAATTTTCCAGGATGATTTGGGGCGTAATACCTCTGTCACCGGCCTTCCTTCTCGTCCAGCCAGTCGCAATGCATTTGATGAAAATGTTGATATCATGAGTCCTGCTGAAGCAGAGTTAGCTCAATTACGCCGTGATCCAACAGCCACTGATGCTTTAAGATCAGGATCAAGTGTTCAAGGATCATCCACAACCCAAAATATTGGCCCGCCAGCTTCATATTCTTATGCTGCTGCACTAGGATCTTCCTTGTCAAGAAGCACTACTCCTGACCCACAACTTGTTGCTAGGGCTCCTAGTCCGTGCCTCACACCTATTGGTGGCGGGAGAGTTGTTGCTTCTGACAAGAGAGGTGTGGCAGCCAGTCCAGATGCATTTAACAGTGTTTCATCTGGCATCAACGAGTCAGCAGATCTTGTGGCTGCATTGTCAGGGATAAACTTGTCAGCAGATGATGTGTTAGATGGTGAAAACCATTTTCCATCACAGGTTGAATCAGATGTTGATAATCACCAGAGATATCTTTTTGGTATGCAAGGTGGTCAAGATCATGGCAAGCAACATGCATATATAAAGAAGTCTGAATCAGGGCACTTGCAAAATTCAGGTAAGAGCAGTAGAAGTGGGTCAGACCTCAACAATCCATCCCTGGATAGGCAAGTTGAGCTACAAAAGTCTACTGTTCCTTCCAATAACTCGTATTTCAAAGGATCGCCTACCTCCCATTTTAGTGGAGGAGGTAGTTTGCCAGCTCAGTATCAGCCTATAGATGGTATGAATTCATCATTTACTAACTATGGCCTAAGTGGGTATGCTGGAAATCCGGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCATGTTTGAAAATGTAGCTGCCGCATCAGCAATGGTGGCCCCTGGAATGGACTCAAGAATTCTTGGAGGTGGTTTGGCTTCAGGAGCTGCTGCTCCATCTGATGTGCATAGTCTTGGTCGGATGGGAAATCAAATTGCAGGTGGTGCTCTTCAGGCTCCTTATGTTGATCCCATGTATCTTCAGTACTTGAGGACATCTGAGTACGCTGCAGCACAACTTGCTGCTCTTAATGACCCCTCTGTGGACAGGAACTACTTAGGTAATTCCTATATGAATTTACTGGAGCTTCAGAAAGCTTATCTTGGGTCTATCCTCTCACCTCAGAAGTCCCAATACAATGTACCGCTGGGCGGTAAATCAGGCAGCTCCAATCATCATGGTTATTATGGAAATCCTGCATATGGTGTTGGATTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACATCTCCAGTTGGATCTGGAAGTCCTATTAGGCACAATGAACTGAACATGCATTATGCTTCTGGAATGAGGAATTTAGCTGGGGTTATGGGACCTTGGCATGTAGATACTGGGAACATGGATGAAAGCTTTGCTTCTTCTCTGCTGGAAGAGTTTAAAAGCAACAAAACCAAATGTTTTGAGCTCTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCTCTTGCTTTGATGACCGATGTCTTCGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGGCTTGCAACCCAGAGAAGAGAACTAGCCAACAAGCTTCCTGGCCACGTTCTGACACTCAGCCTTCAAATGTATGGTTGCCGGGTTATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTCATGCGATGTGTACGTGATCAGAATGGTAATCATGTCATACAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTTTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCTTATGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGCAAAGACCCTACAACACAGCAGAAAGTCATGGATGAGATTCTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTTCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAAAAGTTTGCTTCCAATGTTGTGGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAACGCCAATTGCTAGTGAATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAATTTGCAAACTATGTTGTTCAAAAGGTGCTGGAAACTTGTGATGACCAACAACGTGAGCTGATTCTTTCACGAATCAAGGTTCATTTGAACGCCTTGAAAAAGTACACCTATGGAAAGCATATCGTCGCACGCGTGGAGAAACTTGTTGCTGCTGGAGAAAGAAGAATTGCTGCTCAGTCTCCTCAACCTGCTTAG 3129 0.4426 MLGNNEGCFGDELEKEIGMLLREQRRQDADDRERELNIYRSGSAPPTVEGSLSAVGGLFGGGGDTAASAAFSEFSATKDVNGIVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASVLGGIGDRRKVNRTDDNGGRSLFSTPPGFNIRKQDSEVDNEKTRGSAEWGGDGLIGLPGLGLRSKQKSLAEIFQDDLGRNTSVTGLPSRPASRNAFDENVDIMSPAEAELAQLRRDPTATDALRSGSSVQGSSTTQNIGPPASYSYAAALGSSLSRSTTPDPQLVARAPSPCLTPIGGGRVVASDKRGVAASPDAFNSVSSGINESADLVAALSGINLSADDVLDGENHFPSQVESDVDNHQRYLFGMQGGQDHGKQHAYIKKSESGHLQNSGKSSRSGSDLNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFSGGGSLPAQYQPIDGMNSSFTNYGLSGYAGNPALASLMTNQLGTGNLPPMFENVAAASAMVAPGMDSRILGGGLASGAAAPSDVHSLGRMGNQIAGGALQAPYVDPMYLQYLRTSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSNHHGYYGNPAYGVGLSYPGSPMANSVVSTSPVGSGSPIRHNELNMHYASGMRNLAGVMGPWHVDTGNMDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLATQRRELANKLPGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00770 1042 MobiDBLite consensus disorder prediction 394 449 - -
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 924 959 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 888 923 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 707 742 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 743 778 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 924 959 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 966 1001 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 815 850 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 779 814 IPR001313 GO:0003723
Rops3g00770 1042 SMART pum_5 851 887 IPR001313 GO:0003723
Rops3g00770 1042 FunFam Pumilio homolog 1 isoform 2 686 1033 - -
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 707 742 IPR001313 GO:0003723
Rops3g00770 1042 CDD Pumilio 703 1023 IPR033712 GO:0003723
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 888 923 IPR001313 GO:0003723
Rops3g00770 1042 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 687 1027 IPR033133 GO:0003723
Rops3g00770 1042 SUPERFAMILY ARM repeat 690 1024 IPR016024 -
Rops3g00770 1042 Pfam Nucleic acid binding protein NABP 297 706 IPR012940 -
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 960 1001 IPR001313 GO:0003723
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 815 850 IPR001313 GO:0003723
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 743 778 IPR001313 GO:0003723
Rops3g00770 1042 MobiDBLite consensus disorder prediction 250 270 - -
Rops3g00770 1042 MobiDBLite consensus disorder prediction 132 180 - -
Rops3g00770 1042 MobiDBLite consensus disorder prediction 147 161 - -
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 851 887 IPR001313 GO:0003723
Rops3g00770 1042 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 95 1026 - -
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 894 925 IPR001313 GO:0003723
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 747 778 IPR001313 GO:0003723
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 974 1003 IPR001313 GO:0003723
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 711 745 IPR001313 GO:0003723
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 855 890 IPR001313 GO:0003723
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 929 962 IPR001313 GO:0003723
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 826 849 IPR001313 GO:0003723
Rops3g00770 1042 Pfam Pumilio-family RNA binding repeat 783 816 IPR001313 GO:0003723
Rops3g00770 1042 Gene3D - 687 1033 IPR011989 -
Rops3g00770 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 779 814 IPR001313 GO:0003723
Rops3g00770 1042 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00770 Rops-Chr3 9386377 9393487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00770 K17943 - gmx:100787039 1800.02