Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00768 ATGCAAGCTCTCGTTAGAAGGACAATATCAGTTAAAATTCCCACCAAAAATGGCATCCTTAGCCATCGTTTGTTTCGATCAGAACCCAAATCCTACGTTGAACTCATTGAAACATACGCTCGCGATCGAGCATTGCAGCTGGGAAAGAAGCTTCACGCGCATCTAACCACCAACGGCTTCGCACGTTTCAACGTCATTGCATCAAACCTCGTAACCTTGTATGTTTGTTGTGGCCAACTCTCCCTTGCGCGAAAACTGTTCGACAAAATTCCCATTACAAATGTTCGCCGCTGGATTGCATTCATTGGAACTTGCGCTCGTTGCGGTTTCCACCATCACGCTCTTGCTGTGTTTTCTGAGATGCAAACGATCCAAAGTCTGAAGCCCAACAACGTGTTCGTCATTCCGAGCGTTCTCAAAGCTTGCGGCCATATCGGTGACCGAATTGCTGGAGAGCAAATACATGGCTTGATTTTGAAGTGTTCGTTTGAACTTGATGCTTTTGTGTCGAGTTCGTTGATTGTTATGTACTCAAAATGTGATGAAGTCGAGGATGCGCGCAAGGTGTTTGATGGGATGGCTGTGAAAGACTTGGTGGCTTTGAATGCTGTTGTTTCTGGGTATGCTCAACAAGGGCTTCCAAATGAGGCATCGGGTTTGGTGGAAAGTGTGAAGTTGATGGGTTTGAGGCCAAATGTGGTAACTTGGAATGCTTTGATATCTGGGTTTTCACAGAAAGGTGATCAACCAATGGTCTCTGAGATTTTCAGGTTGATGATTGAAGATGGGGTCGAGCCTGATGTGGTATCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGTAATGAGGAAGCTTTTGATACGTTTAAGCAAATGTTGCGTCATGGGTTCTGTCCAACTTCGGCTACTATTAGCACCCTTGTGCCTGCTTGTGCCACTGCAGCAAGAGTGAGGGTTGGGAAGGAGATTCATGGCTATGCTTTGGTGATTGGGGTGGAGGAAGATGTATATGTAAGGAGTGCTTTGGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCAAGGACTCTGTTTAATAAGATGCCAGAGAAGAACACGGTTACATGGAACTCAATGATTTTTGGTTACGCGAATCATGGATATTGCGAGGAAGCTATTGAGCTCTTCAATCAGATGGAGAAGGAAGGTGCAGCCAAGCTAGATCATTTAACTTTCACTGCAGCTCTCACAGCATGCAGCCATGCTGGAGATATTGAACTTGGGCAGTGGCTGTTCAAGATTATGCAAGAAAAATACAGTATTGAGCCACGATTGGAGCATTATGCATGCATGGTGGATCTTCTTGGTCGAGCAGGGAAACTTGATGAAGCGTATTGCATGATCAAGACGATGCCTGTTGAACCTGATTTATTTGTGTGGGGTGCATTACTGGCTGCTTGTAGAAATCATGGGCACGTGGAGCTTGCAGAAATGGCTGCTAAGCATTTATTGGAATTAGAGCCCGAGAGTGCTGGGAACCGCCTTCTGTTGTCCAGCCTGTATGCCGATGCTGGCAGATGGGGGAAGGTTGAGAAGATCAAGAAAAGAATGAAGAAGGGAAAACTCAGAAAACTACAAGGATTGAGTTGGATAGATAATGTATAA 1653 0.4501 MQALVRRTISVKIPTKNGILSHRLFRSEPKSYVELIETYARDRALQLGKKLHAHLTTNGFARFNVIASNLVTLYVCCGQLSLARKLFDKIPITNVRRWIAFIGTCARCGFHHHALAVFSEMQTIQSLKPNNVFVIPSVLKACGHIGDRIAGEQIHGLILKCSFELDAFVSSSLIVMYSKCDEVEDARKVFDGMAVKDLVALNAVVSGYAQQGLPNEASGLVESVKLMGLRPNVVTWNALISGFSQKGDQPMVSEIFRLMIEDGVEPDVVSWTSVISGFVQNFRNEEAFDTFKQMLRHGFCPTSATISTLVPACATAARVRVGKEIHGYALVIGVEEDVYVRSALVDMYAKCGFISEARTLFNKMPEKNTVTWNSMIFGYANHGYCEEAIELFNQMEKEGAAKLDHLTFTAALTACSHAGDIELGQWLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLDEAYCMIKTMPVEPDLFVWGALLAACRNHGHVELAEMAAKHLLELEPESAGNRLLLSSLYADAGRWGKVEKIKKRMKKGKLRKLQGLSWIDNV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00768 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Rops3g00768 550 NCBIfam pentatricopeptide repeat 269 302 IPR002885 -
Rops3g00768 550 NCBIfam pentatricopeptide repeat 234 268 IPR002885 -
Rops3g00768 550 NCBIfam pentatricopeptide repeat 370 399 IPR002885 -
Rops3g00768 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Rops3g00768 550 FunFam Pentatricopeptide repeat-containing protein 100 231 - -
Rops3g00768 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Rops3g00768 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Rops3g00768 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 548 IPR046960 GO:0003723|GO:0009451
Rops3g00768 550 Gene3D Tetratricopeptide repeat domain 400 549 IPR011990 GO:0005515
Rops3g00768 550 Gene3D Tetratricopeptide repeat domain 99 248 IPR011990 GO:0005515
Rops3g00768 550 FunFam Pentatricopeptide repeat-containing protein mitochondrial 232 319 - -
Rops3g00768 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 367 IPR002885 -
Rops3g00768 550 Pfam PPR repeat family 266 314 IPR002885 -
Rops3g00768 550 Pfam PPR repeat family 367 416 IPR002885 -
Rops3g00768 550 Pfam E motif 486 548 IPR046848 -
Rops3g00768 550 Gene3D Tetratricopeptide repeat domain 326 398 IPR011990 GO:0005515
Rops3g00768 550 Gene3D Tetratricopeptide repeat domain 250 325 IPR011990 GO:0005515
Rops3g00768 550 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 339 550 - -
Rops3g00768 550 SUPERFAMILY TPR-like 335 507 IPR011990 GO:0005515
Rops3g00768 550 Pfam PPR repeat 234 264 IPR002885 -
Rops3g00768 550 Pfam PPR repeat 444 467 IPR002885 -
Rops3g00768 550 Pfam PPR repeat 199 228 IPR002885 -
Rops3g00768 550 Pfam PPR repeat 100 122 IPR002885 -
Rops3g00768 550 Pfam PPR repeat 171 194 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00768 Rops-Chr3 9371171 9373230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00768 32 548 Glycoside Hydrolase AT3G49170 31.115 4.57e-85 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00768 - - gmx:100790576 910.598