Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00762 ATGGCATCATCAACAACTACTCTCTTCAATTTCAGGTTCTCCCTGTTTAACCCACAACACCACCAACATATAAAGAAGTTAAAAGCTCCAATCTCTTCCTTTGGCATCAACCCACACCTTGTTTCTTCCATTAACTATCATTTGAAGCCCACACGTGTCACATATCCAATTATTCCCTCTTACTCTGCTCCTAACCGTAGATTCCACGTTGGAGCACAAAAGGAGTATTCTGCTGGGGACAAATCTGAGTCGCTTGTTTCGGACGCAACATACCAAGAGGAATTTTCTTGGTCTTCTGTTATTCTTCCGTTTCTGTTCCCTGCATTGGGTGGCTTGTTATTTGGTTATGATATTGGTGCCACTTCTGGTGCTACAATTTCACTGCAGTCACCTGAGCTTAGCGGGATAACTTGGTTCAATCTTTCTGCCATTCAACTTGGACTTGTGGTCAGTGGTTCCCTGTATGGGGCTCTTCTTGGCTCGCTTCTTGCATACGCTGTTGCTGATTTCCTTGGGAGGAAGCGACAACTCATTGCTGCAGCCCTGTTGTATGTACTTGGTGGTGCAATCACTGCCATTGCACCTGAACTTGGTGTCCTCTTAGCAGGAAGGCTGCTTTATGGACTCGGTATAGGTTTGGCCATGCATGGGGCTCCTTTATATATTGCAGAAACTTGTCCATCACAAATCCGTGGGACTCTAGTATCATTAAAAGAACTCTTCATTGTCCTGGGGATTCTGCTGGGTTATTTTGTGGGAAGCTTCCAGATTAATACAGTTGGGGGATGGCGGTTCATGTATGGATTTAGTGCCCCTTTTGCTATTTTAATGGGCCTTGGAATGTGGATTCTTCCCCCCTCTCCACGGTGGTTGCTTCTCAAAGCAGTACAAGGAAAAGGTTCTTTTCAAGAGTTGAAGGAAAAGGCAATTTTTTCCCTGAGCAAACTAAGGGGCCGACCAGCCGGTGACAAAGAATCTGAGAGGCAAATAGAAGAGAACCTTGTCTCATTGAAGTCTGCCTATGAAGATCAGGAATCAGAGGGGAGTTTCTTAGAGGTGTTTCAGGGTCCCAATCTGAAAGCCTTCATAATTGGTGGTGGACTAGTCTTATTTCAACAGATAACAGGCCAACCAAGTGTTCTGTATTATGCAGGTCCAATTCTTCAGAGTGCTGGATTTTCTGCTGCATCTGATGCTACAAAAGTTTCAGTTGTTATCGGCTTGTTCAAGTTACTGATGACATGGATTGCTGTCCTAAAAGTAGATGATTTGGGGAGAAGGCCTCTGCTGATTGGAGGCGTCAGTGGCATTGCCCTTTCTTTAGTTCTCCTTTCTGCTTATTATAAATTTCTTGGAGGGTTCCCAGTTGTTGCTGTTGCAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCAATAAGTTGGCTTATGGTATCAGAAATTTTCCCACTTCGCACTAGAGGAAAGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTTGTCTCCTTTGCATTCTTGCCTCTGAAGGAGCTTCTAGGAGCAGAGAACCTTTTTCTCCTTTTTGGGGCCATTTCTTTACTGTCACTTCTGTTCATTATATTTTCTGTCCCGGAGACAAAAGGCTTGAGCTTAGAAGAAATAGAATCCAAAATCTTGAAGTGA 1683 0.4391 MASSTTTLFNFRFSLFNPQHHQHIKKLKAPISSFGINPHLVSSINYHLKPTRVTYPIIPSYSAPNRRFHVGAQKEYSAGDKSESLVSDATYQEEFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGITWFNLSAIQLGLVVSGSLYGALLGSLLAYAVADFLGRKRQLIAAALLYVLGGAITAIAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFQINTVGGWRFMYGFSAPFAILMGLGMWILPPSPRWLLLKAVQGKGSFQELKEKAIFSLSKLRGRPAGDKESERQIEENLVSLKSAYEDQESEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPVVAVAALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFASNAVVSFAFLPLKELLGAENLFLLFGAISLLSLLFIIFSVPETKGLSLEEIESKILK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00762 560 Gene3D MFS general substrate transporter like domains 94 558 IPR036259 -
Rops3g00762 560 ProSiteProfiles Major facilitator superfamily (MFS) profile. 103 547 IPR020846 GO:0022857
Rops3g00762 560 Pfam Sugar (and other) transporter 106 555 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops3g00762 560 NCBIfam sugar porter family MFS transporter 97 554 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00762 560 SUPERFAMILY MFS general substrate transporter 94 555 IPR036259 -
Rops3g00762 560 CDD MFS_GLUT10_12_Class3_like 106 554 - -
Rops3g00762 560 FunFam D-xylose-proton symporter-like 3, chloroplastic 96 558 - -
Rops3g00762 560 Coils Coil 327 347 - -
Rops3g00762 560 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 97 558 - -
Rops3g00762 560 PRINTS Sugar transporter signature 201 220 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00762 560 PRINTS Sugar transporter signature 372 382 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00762 560 PRINTS Sugar transporter signature 459 480 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00762 560 PRINTS Sugar transporter signature 482 494 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00762 560 PRINTS Sugar transporter signature 111 121 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00762 560 ProSitePatterns Sugar transport proteins signature 2. 206 231 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00762 Rops-Chr3 9309999 9314276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00762 68 560 Organic Solute Cotransporters AT5G59250 79.234 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00762 - - gmx:100809316 879.782