Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00747 ATGGCGCTTCGTTGTTTCACAAAAAGATGGGAAATTCGTCGTTTGGCTTTGGTATTCCTCGGAGAGTTTATGAGAACCAGCAACCCCATTAAAGACCCTTCAGCTTCATTGCCTTTGAGACCCTTTGTTGCATTGTGTGAATGCAAAAACGTGTGGGGTTTAAGGCAATACCACGATGGAAGGCCAAGGGGACCCCTTTGGAAGGGGAAGAAACTCATTGGGAAAGAAGCACTCTTTGTGATAACAGGGTTGAAGAGGTTTAAGGATGACGAGGATAAGCTTCAAAAGTTCATCAAAACCCATGTCTTTCGTCTCTTGAAGATGGACTTGATTGCTGTTCTCACTGAACTTGAGCGCCAGCAAGAAGTTTCTCTCGCTCTAATGGTGTTTAAGGTGATGCAAAAGCAGGATTGGTACAAGCCTGATGTATTCGTATACAAGGACTTGATTATTGCGTTGGCAAGGTCTAAAAAAATGGACGAGGTGTTGCAGTTGTGGGAAAGCATGAGAAAGGAGAATTTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAATTATGGATCTCCTGCTGATGCGATGAATATATACGAGGACATGAAGAATTCTCCGGATCCACCAGAGGAGTTGCCATTCAGAATTTTGTTGAAGGGACTCCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAGGAAATCTTTCCAGATTCCAGTATCTATGATCCACCACAAGAGATATTTGGTGTACGCTGA 774 0.4302 MALRCFTKRWEIRRLALVFLGEFMRTSNPIKDPSASLPLRPFVALCECKNVWGLRQYHDGRPRGPLWKGKKLIGKEALFVITGLKRFKDDEDKLQKFIKTHVFRLLKMDLIAVLTELERQQEVSLALMVFKVMQKQDWYKPDVFVYKDLIIALARSKKMDEVLQLWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGVR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00747 257 Gene3D Tetratricopeptide repeat domain 71 257 IPR011990 GO:0005515
Rops3g00747 257 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 51 256 IPR044795 -
Rops3g00747 257 Pfam PPR repeat family 141 188 IPR002885 -
Rops3g00747 257 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Rops3g00747 257 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Rops3g00747 257 NCBIfam pentatricopeptide repeat 145 177 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00747 Rops-Chr3 9190863 9192656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00747 140 234 Glycosyltransferase AT1G05670 24.211 2.61e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00747 - - psat:127105833 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00747 3 9190863 9192656 Rops3g00747 3 9190863 9192656 ECH