Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00729 ATGTTGAGGGTGGCAGTGCGGTGGAATTGGAGGCCGTTGGTTTCTCTCCCTCTAACTCACTTCACCCACCGAAATCTCAAAACACTAAACCCTAGGCCTGGATTCCCAACCTCGAAGCTCTTCTGTTCTGCTCTTACTCAAACCTCACCTTCTCTCGATGTCGACGTGGACACCTACCTCCGCTGTTCCATACCGGAAAAGAAACCGCTCCGAGTTGCAGTTCTTGTTAGCGGAGGTGTGGATAGCAGCGTCGCTCTCCGGCTACTCCACGCCGCGGGCCATTCTTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTTGAGAATTTTTGGTCGGAATGTCCCTGGGAAGAGGATTTAAAGTATGCCAAAGCTGTTTGTAATCAGGTTGAAGTACCTTTAGAAGTTGTTCATTTGACAGATGAATACTGGAACAATGTGGTTTATTACATCATTGAAGAGTATCGGAATGGCCGAACTCCTAACCCAGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGAGGCAATCAGTGGTATGGGTTTTGATTATGTTGCCTCTGGGCATTATGCAAATGTTGTCCACCCATTTGAAGATAAGATGGATGAGCCTTCTGTTCTAGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCTCAATCCCAGCTGAAGAGACTTCTTTTTCCACTTGGTTGTATTCCCAAGGCTGAAGTCCGTAGGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAAGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGCGAATTTGTAGCAAGACATATTGGGGAGAAAGAAGGTATCATACTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACATAGGGGCTTCTGGTTTTATACTATTGGTCAGCGCCAAGGTCTACGGCTACCTGGAGGCCCATGGTACGTTGTTGAGAAGGATATTAAAAATAATGTAGTTTTTGTGTCAAGAAATTACTTTTCCTTTGACAAAAGAAGGCGCATATTCCGTGTTGGCTCTTTAAAATGGCTCAGTGGGTTGCCCCCTAGCCAGACAAGTCAGCTTCAATGCAAGGTGAGACATGGTCCTGGATTCTATAATTGTAGCTTACAAATGGTAGTTGAAGATGACCAAGATGAAACTGCTGTCGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCAGCCTTCTATGAGGGAAGAACATGTATAGGTTCTGGTGTGATTTTGGAGTCCTGGGATGATCAAGGTTTTCCAATATGTGCAAAAGCTTTAGAAATTGCCAGAATGGAAGATAAATCAAAGATTGGGAATCCAGCTAAGATAAAAGTTAAACCAGATAACCCACAAGAAGTGTGTGATTCCACAGAGTTGGCAAGTAAAGCATCATAA 1455 0.4364 MLRVAVRWNWRPLVSLPLTHFTHRNLKTLNPRPGFPTSKLFCSALTQTSPSLDVDVDTYLRCSIPEKKPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCNQVEVPLEVVHLTDEYWNNVVYYIIEEYRNGRTPNPDVLCNTRIKFGAFLEAISGMGFDYVASGHYANVVHPFEDKMDEPSVLELSQDMVKDQTYFLSHLSQSQLKRLLFPLGCIPKAEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEKEGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDIKNNVVFVSRNYFSFDKRRRIFRVGSLKWLSGLPPSQTSQLQCKVRHGPGFYNCSLQMVVEDDQDETAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILESWDDQGFPICAKALEIARMEDKSKIGNPAKIKVKPDNPQEVCDSTELASKAS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00729 484 MobiDBLite consensus disorder prediction 460 484 - -
Rops3g00729 484 Gene3D Translation factors 350 438 - -
Rops3g00729 484 Pfam Aminomethyltransferase beta-barrel domain 351 430 IPR046885 -
Rops3g00729 484 CDD tRNA_Me_trans 71 430 IPR004506 GO:0008033|GO:0016740
Rops3g00729 484 Pfam tRNA methyl transferase HUP domain 71 274 - -
Rops3g00729 484 Gene3D - 284 343 IPR023382 GO:0016783
Rops3g00729 484 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 71 316 - -
Rops3g00729 484 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 71 430 IPR004506 GO:0008033|GO:0016740
Rops3g00729 484 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 70 431 IPR004506 GO:0008033|GO:0016740
Rops3g00729 484 Gene3D HUPs 57 283 IPR014729 -
Rops3g00729 484 Pfam tRNA methyl transferase PRC-barrel domain 279 341 IPR046884 -
Rops3g00729 484 FunFam tRNA-specific 2-thiouridylase MnmA 284 343 - -
Rops3g00729 484 PANTHER - 57 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00729 Rops-Chr3 8939400 8942736 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00729 K21027 - gmx:100785275 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00729 3 8939400 8942736 Rops3g00729 3 8939400 8942736 ECH