Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00728 ATGGCTATCTCTTACTTCACCCTCCCTAAAACCTTAAACCCCATTTTCCCATTCCACAACACTCTTCCCTTCTCCCCTTCCATTCTTTCCACGCCTTCTCGCCCATATTCCATCTTACTCCCTCGCCGGAGCCTCTCCCGCTCCGTCCTTCGGTTTTGCGCCGGCGAATTCTCCGGTGGTGTCGATGACGATGGAGGTTCAGAGGAGGAATATTATTCAGACGACGATGACGTTGATGTTATGGAGCTCGAGCAAGAGGCGAAGGACGCAGTTCTAGAATATTCTAGCTCTCTCTCTCACATTTTGAGCATCGAAGATGAGAAAAATGATCTCAAGGAAACAGCTCAATCTCACAAGAGGAGTAAACAGAGAAACAAAATTATCCCTGATAATCTTCTCCCAAGGGTTGCTATTGTTGGAAGACCGAATGTTGGCAAGTCAGCATTATTTAATCGTCTAGTTGGGGGAAACAGGGCAATCGTGGTGGATGAACCTGGGGTTACCAGGGATCGTTTATATGGTCGATCATTTTGGGGGGAGCATGAGTTCATGGTGGTGGACACAGGTGGGGTTCTCACTGTTTCAAAATCACAAGCTAATGTTATGGAAGACCTGTCTATTACAACTACCATTGGTATGGATGGTATTCCACTTGCCTCTAGAGAGGCAGCTGTTGCCAGGATGCCATCAATGATTGAGAGACAAGCGATTGCAGCTGTGGAAGAATCATCTGTTATTATTTTCCTTGTTGATGGTCAGGCAGGTCTAACGGCAGCCGATACGGAGATTGCTGATTGGCTACGTAGAAACTACTCAAATAAATGTGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGGAAAAGAATTATGCAGGTGTCTGAGTTTTGGTCCCTTGGGTTTGATCCGCTCCCAGTATCAGCTATATCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCAGGGCTACAGAAAATTGAGGAACCAAAGAATCTTGTTGAAGAAGAAGATTATGTTCCTGCAATTTCAATTGTTGGTAGGCCAAATGTGGGCAAAAGTAGCATTTTGAATGCACTGGTTGGTGAAGACAGAACAATAGTCAGCCCCATCAGTGGCACTACACGTGATGCTATTGATACCGAATTCACTGGAGCAGATGGCCAGAAGTTCCGCCTTATTGATACTGCTGGAATCAGGAAAAGGGCAGCCGTAGCCTCAGCTGGAAGTACCACAGAGGCTTTGTCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCCCTTGTCATTGAGGCCATGGCTGGTATCACAGAACAGGACTACAAGATAGCTGAAAGGATAGAAAAGGAAGGGAAAGGTTGTGTCATCGTTGTAAACAAGTGGGATACAATACCGAATAAAAATCAGCAGACTGCAATGTACTATGAGCAAGATGTCAGGGAGAAGCTTCGTGTACTTGACTGGGCTCCAATTGTTTATTCTACTGCAATAGCTGGTCAAAGTGTGGACAAGATTATTGTCGCTGCTAGTGAAGTTGAAAAGGAGAGATCAAGAAGACTCGGGACTTCTATATTGAATCAAGTATTGCAGGAAGCAGTAGCTTTTAAGCCTCCTCCCAGGACACGAGGTGGGAAAAGAGGGCGTGTTTACTATTGCACTCAGGCTGCTATAAGGCCGCCTACATTTGTGTTCTTTGTCAATGATGCAAAACTGTTTCCTGAGACTTACCGGCGGTACATGGGGAAGCAGCTGCGTACAGATGCAGGTTTTCCTGGTACCCCGATTCGGCTTTTGTGGCGCAGCAGAAGGAAAATGGGAAAAGATGAAGGTAAAGCTGTAACAAGGACCCAAGAGAATCTTAAATCACATGATCGAAAATTGGGATCACTCAATTACTCAAATGCTTCTGCTTCCTGA 1932 0.455 MAISYFTLPKTLNPIFPFHNTLPFSPSILSTPSRPYSILLPRRSLSRSVLRFCAGEFSGGVDDDGGSEEEYYSDDDDVDVMELEQEAKDAVLEYSSSLSHILSIEDEKNDLKETAQSHKRSKQRNKIIPDNLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSFWGEHEFMVVDTGGVLTVSKSQANVMEDLSITTTIGMDGIPLASREAAVARMPSMIERQAIAAVEESSVIIFLVDGQAGLTAADTEIADWLRRNYSNKCVILAVNKCESPRKRIMQVSEFWSLGFDPLPVSAISGTGTGELLDLVCSGLQKIEEPKNLVEEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGADGQKFRLIDTAGIRKRAAVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMAGITEQDYKIAERIEKEGKGCVIVVNKWDTIPNKNQQTAMYYEQDVREKLRVLDWAPIVYSTAIAGQSVDKIIVAASEVEKERSRRLGTSILNQVLQEAVAFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRYMGKQLRTDAGFPGTPIRLLWRSRRKMGKDEGKAVTRTQENLKSHDRKLGSLNYSNASAS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00728 643 Gene3D - 339 522 IPR027417 -
Rops3g00728 643 Hamap GTPase Der [der]. 133 608 IPR016484 GO:0005525
Rops3g00728 643 PANTHER GTPASE DER 111 631 - -
Rops3g00728 643 FunFam GTPase Der 337 519 - -
Rops3g00728 643 Pfam 50S ribosome-binding GTPase 135 282 IPR006073 GO:0005525
Rops3g00728 643 Pfam 50S ribosome-binding GTPase 344 465 IPR006073 GO:0005525
Rops3g00728 643 MobiDBLite consensus disorder prediction 611 630 - -
Rops3g00728 643 Gene3D - 131 338 IPR027417 -
Rops3g00728 643 ProSiteProfiles EngA-type guanine nucleotide-binding (G) domain profile. 134 329 IPR031166 GO:0005525
Rops3g00728 643 FunFam GTPase Der 520 608 - -
Rops3g00728 643 ProSiteProfiles EngA-type guanine nucleotide-binding (G) domain profile. 342 522 IPR031166 GO:0005525
Rops3g00728 643 Pfam KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 524 605 IPR032859 -
Rops3g00728 643 PRINTS GTP1/OBG GTP-binding protein family signature 394 409 IPR006073 GO:0005525
Rops3g00728 643 PRINTS GTP1/OBG GTP-binding protein family signature 344 364 IPR006073 GO:0005525
Rops3g00728 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 611 IPR027417 -
Rops3g00728 643 Coils Coil 101 124 - -
Rops3g00728 643 NCBIfam ribosome biogenesis GTPase Der 227 604 IPR016484 GO:0005525
Rops3g00728 643 CDD EngA2 344 517 - -
Rops3g00728 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 327 IPR027417 -
Rops3g00728 643 NCBIfam small GTP-binding protein domain 342 509 IPR005225 GO:0005525
Rops3g00728 643 CDD EngA1 137 325 - -
Rops3g00728 643 Gene3D - 524 608 IPR015946 -
Rops3g00728 643 MobiDBLite consensus disorder prediction 611 643 - -
Rops3g00728 643 FunFam GTPase Der 131 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00728 Rops-Chr3 8929897 8935916 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00728 - - gmx:100777588 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00728 3 8929897 8935916 Rops3g00728 3 8929897 8935916 ECH