Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00691 ATGGCTATAGAACGAGGGCTCGATGATATAAAGGATTTGATGGGTCAATCTTTTCTCTTAGAGCTTGTTAGCGCTGCCCTTAATCCCAAGACGACATTAGATAAGGAAACTATTCAAAGTTACGAGCACAAGTCGCACCAATCAGCACAAGAGGTGAAGTATGAGGCTGAATTTGAAGTGCCAGAAAGTTTTGGAGAGATTGGTGCCATTCTTGTGGAGAATGAGCATCACAGGGAGATGTTCATTAAGGACGTGGTCCTTGATGGCTTCCTCACTGGTCCCGTTAATTTTTGCTGCGAATCATGGGTTCATTCCAAGTATGATAACCCTGTTAAGAGGGTGTTTTTCTCAAACAAGGTTTCATCATTACACCCTCTCCATATAGCTTATGTTTATCTATTAATAATTCATGGATATTTGGAAGTATAA 429 0.4056 MAIERGLDDIKDLMGQSFLLELVSAALNPKTTLDKETIQSYEHKSHQSAQEVKYEAEFEVPESFGEIGAILVENEHHREMFIKDVVLDGFLTGPVNFCCESWVHSKYDNPVKRVFFSNKVSSLHPLHIAYVYLLIIHGYLEV* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00691 142 ProSiteProfiles PLAT domain profile. 1 117 IPR001024 GO:0005515
Rops3g00691 142 Pfam PLAT/LH2 domain 39 116 IPR001024 GO:0005515
Rops3g00691 142 CDD PLAT_LH2 5 118 IPR042057 -
Rops3g00691 142 Gene3D PLAT/LH2 domain 1 120 - -
Rops3g00691 142 PANTHER LIPOXYGENASE 13 122 IPR000907 GO:0016702|GO:0034440|GO:0046872
Rops3g00691 142 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 4 120 IPR036392 GO:0005515
Rops3g00691 142 SMART LH2_4 1 118 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00691 Rops-Chr3 8410518 8411876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00691 7 119 Acyl Lipid Metabolism Gene Families AT1G17420 43.590 1.31e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00691 K00454 - gmx:100787202 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00691 3 8410518 8411876 Rops3g00691 3 8410518 8411876 ECH