Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00689 ATGGGAATGGCATATCTATGTCTCCTCCACCTTGGTGTCTTCACTATTGTTATAAGCTCGTTGGTTACAAGCATTGCAGCTGTTAAGCCTACTCTTGTTGACATTGCTTCTCTAAACAGGAGCAGTTTCCCAGCAGGTTTCATCTTTGGGACAGCCTCTTCTTCCTACCAGTATGAAGGTGCTGCAACTGAAGGAGGCAGAGGGCCAAGTACATGGGATACCTATACTCATAAACACCCGGAAAAAATAACGGATGGAAGCAATGGAGATGTAGCTGTTGATCAGTATCATCATTATAAGGAAGATGTTAAGATCATGAAGTACATGAATACGGATGCTTACAGATTCTCCATCTCTTGGTCAAGGATATTGCCAAAGGGAAAAATAAGCGCGGGTATAAACCAAGAAGGAATCAAATATTACAACAACCTGATCAACGAGCTACTAGCCAATGGTTTGCAACCATTTGTGACCCTTTTCCATTGGGATCTTCCCCAAGCCTTACAAGATGAGTATGGTGGCTTCTTGAGCCCTCATATTATAAATGATTTCCAGGACTATGCAGAGCTCTGCTTCAAGGAATTTGGAGATAGAGTGAAGCACTGGATCACTCTTAATGAGCCATGGAGTTATAGTATGGGTACAGAGCCCTATGGGGCCTCACACTACCAACTCCTTGCTCATGCAGCTGCTTTCAAAGTTTATAAAACCAAGTATCAGGCATCTCAAAAAGGTTTGATAGGCATCACCTTAAATTGTCACTGGTTCCTGCCATTCTCAAATGACAAATTAGACCATGAGGCTGCCCAACGTGCTCTTGATTTCATGTTTGGATGGTTTATGGACCCATTGACAACAGGAAAGTATCCAAAATCCATGGTGTCTTTGGTGGGAAAGCGATTACCAAACTTCACTGAAGAGCAATCCAAGCTACTTATTGGCTCATTTGATTTTATTGGACTAAATTACTATACCACTAATTATGCTGCCCATTTAACCCATCCAAGTAACGACCCAAGCCAATCTCGCTATTACCACGATACTCATGTCAATTTAACAACTGAGCGTAACGGCACACCCATTGGACCAAGGGCTGCTTCATCTTGGCTATTCGTTTATCCAAAGGGAATTCGAGAACTATTGTTGTACATAAAGACAAAGTATAACAACCCTTTGATTTACATAACAGAAAATGGTATGGACGAATTCAATGATCCAACACTAACACTTGAAGAGGCGCTCATGGATACTTATAGAATTGATTACTTCTATCGTCATCTTTATTATATTTCAATAGCTATCAAGGATGGTGTGAATGTACAAGGATATTTTGCCTGGTCACTTTTGGACAACTTTGAATGGAGTTCCGGCTACACCGTGCGTTTTGGAATTAACTTCGTCGATTACAAAGATAATTTGAAAAGACACCAGAAGCTCTCTGCCCATTGGTTTAGGAATTTTCTCAAAAAATATTAA 1476 0.4072 MGMAYLCLLHLGVFTIVISSLVTSIAAVKPTLVDIASLNRSSFPAGFIFGTASSSYQYEGAATEGGRGPSTWDTYTHKHPEKITDGSNGDVAVDQYHHYKEDVKIMKYMNTDAYRFSISWSRILPKGKISAGINQEGIKYYNNLINELLANGLQPFVTLFHWDLPQALQDEYGGFLSPHIINDFQDYAELCFKEFGDRVKHWITLNEPWSYSMGTEPYGASHYQLLAHAAAFKVYKTKYQASQKGLIGITLNCHWFLPFSNDKLDHEAAQRALDFMFGWFMDPLTTGKYPKSMVSLVGKRLPNFTEEQSKLLIGSFDFIGLNYYTTNYAAHLTHPSNDPSQSRYYHDTHVNLTTERNGTPIGPRAASSWLFVYPKGIRELLLYIKTKYNNPLIYITENGMDEFNDPTLTLEEALMDTYRIDYFYRHLYYISIAIKDGVNVQGYFAWSLLDNFEWSSGYTVRFGINFVDYKDNLKRHQKLSAHWFRNFLKKY* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00689 491 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
Rops3g00689 491 PRINTS Glycosyl hydrolase family 1 signature 437 454 IPR001360 GO:0004553|GO:0005975
Rops3g00689 491 PRINTS Glycosyl hydrolase family 1 signature 393 401 IPR001360 GO:0004553|GO:0005975
Rops3g00689 491 PRINTS Glycosyl hydrolase family 1 signature 461 473 IPR001360 GO:0004553|GO:0005975
Rops3g00689 491 PRINTS Glycosyl hydrolase family 1 signature 315 329 IPR001360 GO:0004553|GO:0005975
Rops3g00689 491 PRINTS Glycosyl hydrolase family 1 signature 416 427 IPR001360 GO:0004553|GO:0005975
Rops3g00689 491 SUPERFAMILY (Trans)glycosidases 30 489 IPR017853 -
Rops3g00689 491 PANTHER GLYCOSYL HYDROLASE 42 490 IPR001360 GO:0004553|GO:0005975
Rops3g00689 491 FunFam Beta-glucosidase 12 29 213 - -
Rops3g00689 491 FunFam Beta-glucosidase 12 214 490 - -
Rops3g00689 491 Gene3D Glycosidases 23 490 - -
Rops3g00689 491 Pfam Glycosyl hydrolase family 1 41 490 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00689 Rops-Chr3 8384728 8389720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00689 1 490 Glycoside Hydrolase AT5G44640 52.224 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00689 K01188 - gmx:100785608 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00689 3 8384728 8389720 Rops3g00689 3 8384728 8389720 ECH