Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00653 ATGGGAAACACTACCCATCTTCTTGTTAAGCTCTTCCTTTTACTTCTAACTCTTCACTCTTCTTTCGCTGAGCTTTTCTTTGAAGAGAGATTTGAAGATGGATGGAAGAGTCGTTGGGTTTTGTCGGATTGGAAAAGGAGTGAAGGAAAGGCAGGTACTTTCAAGTACACAGCTGGAAAATGGCCTGGAGATCCTGATGATAAAGGTATTCAGACATATAACGATGCCAAGCATTTTGCTATATCTGCAAAGGTACCAGAGTTGAGCAATAAGAACAGAACCCTGGTGGTCCAGTATTCTATTAAATTTGAGCAGGACATTGAGTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAGAAGTTTGGCGGTGATACTCCTTATAGTTTGATGTTTGGACCAGATATATGTGGCACACAGACAAAGAAGCTCCATGTTATATTGTCATACCAGGGGCAGAATTATCCTATTAGAAAGGATCTGCAATGTGAAACAGACAAATTGACTCACTTCTATACTTTTTTTCTGAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATTCTTCCTCCAAGGAGAATCAAGGATGTCAAGGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGATGTCAAGCCAGAGGGATATGATTCAATTCCAGCCGAAATTCCTGATCCAAAAGCCAAGAAGCCTATTGACTGGGATGATGAAGATGATGGACTATGGAAGCCCCCCAAAATTCCTAATCCAGCATATAAAGGACCGTGGAAACGCAAGAAAATCAAGAACCCGAACTACAAGGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAAGATGATCCTGATCTTTATGTGCTGAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCTGGTTCTATTTACGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAACAAGTTGTAGAAGAATTTATGGTTAATAATAGAGAGACTGAAAAAGAAGCTTTTGAAGAAGTAGAAAAAGAAAGAAGGGCCCGGGAAGAAGAGGAGGCACAAAGAGCAAGAGAAGAGGGTGAAAATAGGAGGAGAGAGAGGGATCGTAAACATGGAGACAAGAGACGCCGTAGAAGGCCGGATCCTCACGATGACATGGACGATTATTACCATGATGAGCTTTGA 1260 0.4127 MGNTTHLLVKLFLLLLTLHSSFAELFFEERFEDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGIQTYNDAKHFAISAKVPELSNKNRTLVVQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGTQTKKLHVILSYQGQNYPIRKDLQCETDKLTHFYTFFLRPDASYSILVDNRERDSGSMYTDWDILPPRRIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPIDWDDEDDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILICDDPQYAKQVVEEFMVNNRETEKEAFEEVEKERRAREEEEAQRAREEGENRRRERDRKHGDKRRRRRPDPHDDMDDYYHDEL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00653 419 PANTHER CALRETICULIN AND CALNEXIN 8 384 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 FunFam Calreticulin 209 310 - -
Rops3g00653 419 MobiDBLite consensus disorder prediction 403 419 - -
Rops3g00653 419 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 222 IPR013320 -
Rops3g00653 419 MobiDBLite consensus disorder prediction 224 254 - -
Rops3g00653 419 ProSitePatterns Calreticulin family signature 2. 134 142 IPR018124 GO:0005509
Rops3g00653 419 Gene3D Calreticulin/calnexin, P domain 198 318 IPR009033 GO:0005509|GO:0005515
Rops3g00653 419 MobiDBLite consensus disorder prediction 358 393 - -
Rops3g00653 419 FunFam Calreticulin 1b 24 207 - -
Rops3g00653 419 PRINTS Calreticulin signature 318 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 PRINTS Calreticulin signature 247 269 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 PRINTS Calreticulin signature 104 122 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 PRINTS Calreticulin signature 130 146 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 PRINTS Calreticulin signature 285 304 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 PRINTS Calreticulin signature 219 232 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 Pfam Calreticulin family 28 262 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 Pfam Calreticulin family 264 337 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 PIRSF Calreticulin 3 415 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Rops3g00653 419 Gene3D - 25 380 - -
Rops3g00653 419 MobiDBLite consensus disorder prediction 358 419 - -
Rops3g00653 419 SUPERFAMILY P-domain of calnexin/calreticulin 205 320 IPR009033 GO:0005509|GO:0005515
Rops3g00653 419 ProSitePatterns Calreticulin family signature 1. 102 117 IPR018124 GO:0005509
Rops3g00653 419 Coils Coil 356 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00653 Rops-Chr3 8023602 8030966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00653 8 345 Miscellaneous Gene Families AT5G61790 35.176 1.26e-63 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00653 K08057 - gmx:100802428 711.064