Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00639 ATGGCCGTCAACGATGCTGATCAATCCAACAAGGCTCACAGGTTCCGTCAATCCGGTTCCAAATCCGACAAAAAGAAGCAGAAGAAGAAGAAGCAGAAACACGATGCGGGACAGGATCAGAAAAATCAAAACCCTAAGGCTTTCGGGTTCTCTTCTTCTAACAAAGCCAAACGATTGCAATCACGCGCCGTGGAGAAAGAGCAGCGCCGCCTTCACGTTCCGATCATCGACCGCACTTACGGTGAACCCGCTCCATACGTCGTCGTCGTGCAGGGTCCACCCCAGGTTGGGAAGTCATTGTTGATAAAGTCTTTGATAAAGCATTATACAAAGCATAATTTGCCTGAAGTTAGAGGTCCAATTACTATTGTATCAGGGAAGCAAAGGAGGTTGCAGTTTGTGGAATGTCCAAATGATATCAATGGAATGATAGATGCAGCAAAGTTTGCTGATCTAGCACTTCTTCTTATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAATTCCTTAATATTTTGCAAGTTCATGGGTTCCCAAAGGTCATGGGTGTTCTTACTCATCTTGATAAATTCAAGGATGCTAAAAAGTTGAGGAAAACAAAACAACGACTCAAACACCGGTTTTGGACCGAAATATATGATGGAGCTAAATTGTTTTACTTATCTGGCCTTATTCATGGAAAGTATGTCAAACGTGAAGTTCACAATCTTGCTCGATTTATCTCTGTCATGAAGTTTCATCCTTTATCCTGGCGAACTTCCCACCCCTATGTTTTGGTAGATCGTTTTGAAGATATCACTCCTCCTGAGAAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACACTTTATGGTTATCTTAGAGGTTGTAATTTGAAAAATGGCAATAAGGTGCACATAGCTGGAGTGGGTGATTATAGTTTAGCTGGCGTTACTGCTTTACCTGATCCTTGTCCTCTTCCATCTGCTGCCAAAAAGAAAGGACTGCGTGATAAGGAAAAGTTATTCTATGCTCCCATGTCTGGCCTTGGGGATCTTCTGTATGACAAAGATGCTGTATACATAAATATTAATGATCACCTTGTTCAATTTTCAAAAGTTGATGATGAAAACTCTGCTATGACAAGCAAAGGAAAGGACAGAGATGTAGGGGAGGTTTTGGTGAAATCACTTCAGAATACCAAATACTCAATCAATGAAAAGCTAGAAAACAGCTTTATCAATCTTTTTGGGCAAAAGCCAAAAGATTCATCAGAAGCTCTAGCTGATGTGCCGGGTACAAACAAGGATGTAGAGCAGGATGGCAAAATAGAGACTTTGGATAAATATCAGCCTGTAGTCGGTGAAGATAATAATGAAATGGATTTGGATGGTTCAGAATCATCTGATCAGGATGAAACTGATACCATGACAGACAGCGAAGCCCATGGTTCTGATGATGAAGATGGTGATGCAACTGGTAGCAAAGCTACAAATGGAGACCACTTAAAAGAACATATTGAGTTTCACAATGGAAGACGAAGGAGAAGAGCAATCTTTGGAAATGATGTTGATCAAAGTGAACTGATGGATTCAGAAGAAGAGGAGGAGGATGGTGCTGCCAGTGATAATGGGGCATCTTCTGATTCAGAATCTTCAAAAGAAGAGGAGGAAGATGACAACAATAATGATGACACAAGTGAAGATGATATGGGAAATGTTTCAAAGTGGAAAGAGTCTTTGGCAGAAAGAACTCTCTCACGGAAAACTCCTAGTTTGATGCAACTTGTATATGGGGAATCTACTGTTAATTCAACCTCTACAGACAAAGATGATGACAGTAGTGGGGATGAGGAAGGTGAAGGTGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAGTATGAGAGATGGATTGAAGGATGGAATGGTCAACAACACTGAGGATTGTTCAAAGTGTGTACAATTTATGGATCAGAGATGGGATGAGGAAGATAATGAGGAGATTCGCAACCGTTTTGTGACGGGAAATTTGGCAAAAGCTTCACTCAGAAATGCACTACCAAAAGCTAATTCTGAAGAGGAAAATGATGATGTCTATGGTGATTTCGAGGATTTAGAAACAGGAGAAAAATATGAGAATGATCACACAGATGATGCTTCTGTGGCAACAATGCAGAAGGGAAATGATTTGGAAGCTGAGGAGCGGAGGCTTAAGAAACTTGCTCTTCGTGCAAAATTTGATTCTCAATTTGATGATGACCTTGGGTCACCAGAGGAAGATGCTGTTAATGAAAATGAAGCCAGGTTCCGTCGTGGTCAACCTAATGAAAGCAACTATTTTGACAAGTTGAAGGAGGAGATTGAGCTTCGGAAACAAATGAATATCGCTGAACTCAATGATCTTGATGAGGCTACCAGATTAGAGATAGAAGGCTTCCGAACAGGGACATACCTAAGATTGGAGGTTCATGATGTTCCCTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTCGGTTTAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTCCTGAAGACTAGAGACCCAATTATTGTTTCTGTTGGATGGAGACGTTACCAGACAACCCCAGTTTATGCTATTGAGGATCGCAATGGAAGGCATCGAATGCTAAAATACACTCCAGAACATATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCTAACACTGGAGTAATTGCTGTTCAGAATTTATCAAACAATCAGGCAACTTTCAGGATTACTGCAACTGCAGTTGTACTGGAGTTTAATCACGCAGCAAGGACAGTGAAGAAAATCAAATTGGTTGGTTACCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGAACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGATAGGTAACCAACCAAAAAGGAAGGGTGGGCAAACCAAAGAAGGAGTTGCTAGGTGCAGTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGGGCATGGACTCAAGTTGAAATTCCTCAGTTTTATAATCCATTGACAACAGCATTGCTGCCTCGTGATCAGACTTGGAAAGGAATGAGAACTGTTGCAGAATTGAGAAGAGAACACAACCTTCCTACCCCTGTAAACAAAGATTCTCTTTACAAGAAAATTGAAAGGAAACCCAGAAAGTTCAATCCGTTGGTGATTCCCAAGTCTCTACAGGCTGAGCTTCCCTTTGCATCAAAACCCAAGGATATACCCAACCGGAAAAAGCCATTGCTTGAAGAGAGAAGACAAAAGGGTGTTGTCATGGAACCTCGTGAGCGTAAAATTCATGCTCTTGTTCAACACCTCCAGTTAATGAATCATGAGAAGATGAAAAAGCGAAAGCTCAAGGAAGAGAAGAAGAGGAAAGAACTTGAAGCAGAGAAAGCAAAGGACGAGCAGGTGTCGAAAAAGCGCCGAAGAGAGGAACGGCGAGTGAAGTACCGGGCACAAGACAAGCTGGTTAAGAAAATTCGGAGATCAGAGGTTTGA 3648 0.4169 MAVNDADQSNKAHRFRQSGSKSDKKKQKKKKQKHDAGQDQKNQNPKAFGFSSSNKAKRLQSRAVEKEQRRLHVPIIDRTYGEPAPYVVVVQGPPQVGKSLLIKSLIKHYTKHNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKNGNKVHIAGVGDYSLAGVTALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDDENSAMTSKGKDRDVGEVLVKSLQNTKYSINEKLENSFINLFGQKPKDSSEALADVPGTNKDVEQDGKIETLDKYQPVVGEDNNEMDLDGSESSDQDETDTMTDSEAHGSDDEDGDATGSKATNGDHLKEHIEFHNGRRRRRAIFGNDVDQSELMDSEEEEEDGAASDNGASSDSESSKEEEEDDNNNDDTSEDDMGNVSKWKESLAERTLSRKTPSLMQLVYGESTVNSTSTDKDDDSSGDEEGEGDFFKPIEEVKKQSMRDGLKDGMVNNTEDCSKCVQFMDQRWDEEDNEEIRNRFVTGNLAKASLRNALPKANSEEENDDVYGDFEDLETGEKYENDHTDDASVATMQKGNDLEAEERRLKKLALRAKFDSQFDDDLGSPEEDAVNENEARFRRGQPNESNYFDKLKEEIELRKQMNIAELNDLDEATRLEIEGFRTGTYLRLEVHDVPCEMVEYFDPYHPILVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVIAVQNLSNNQATFRITATAVVLEFNHAARTVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGQTKEGVARCSFEDKILMSDIVFLRAWTQVEIPQFYNPLTTALLPRDQTWKGMRTVAELRREHNLPTPVNKDSLYKKIERKPRKFNPLVIPKSLQAELPFASKPKDIPNRKKPLLEERRQKGVVMEPRERKIHALVQHLQLMNHEKMKKRKLKEEKKRKELEAEKAKDEQVSKKRRREERRVKYRAQDKLVKKIRRSEV* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00639 1215 MobiDBLite consensus disorder prediction 1161 1203 - -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 564 580 - -
Rops3g00639 1215 Coils Coil 1158 1192 - -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 522 537 - -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 471 517 - -
Rops3g00639 1215 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Rops3g00639 1215 Gene3D - 86 248 IPR027417 -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 18 32 - -
Rops3g00639 1215 SMART DUF663_2 717 1046 IPR007034 -
Rops3g00639 1215 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Rops3g00639 1215 FunFam BMS1 ribosome biogenesis factor 86 248 - -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 1171 1203 - -
Rops3g00639 1215 CDD BMS1 47 276 IPR037875 GO:0005525
Rops3g00639 1215 MobiDBLite consensus disorder prediction 455 470 - -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 1 65 - -
Rops3g00639 1215 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 724 1047 IPR007034 -
Rops3g00639 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 222 IPR027417 -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 581 600 - -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 418 624 - -
Rops3g00639 1215 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
Rops3g00639 1215 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1197 IPR039761 GO:0042254
Rops3g00639 1215 MobiDBLite consensus disorder prediction 547 562 - -
Rops3g00639 1215 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00639 Rops-Chr3 7879436 7887557 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00639 K14569 - gmx:100810906 1986.07