Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00616 ATGACAAACGCAAAAGTTGGAAACATGTTGGTAGAGAGAAATTCGTTACAGAGGCCAAAATTTGGAGCCTTCTTGCAGCACTCTGATCCGACGTCGCTTTATAGCTTCAACAACGACGATGAAGACCTCTCTCTCTCACATAATAACCGTCTCAGCAACGTCTCCGCCACAAGCCCTCGAAACTACGGCGCTGACAACAACAGTAGCAGCAGCAACAATGCCTCTCCTTACTTGATGTCACCTTTGAACCAAGCTCCTTCCTCTCCATATCAAAAATCTCCATGGTTATTACCCACACAGCCAATCAACCTCTTCCTTCACGATGGCAACGACAACTTCCCTCAAGATGGTCTCATCGGGTCCCTCGTTCGTGAAGAGGGTCACATATATTCCTTGGCGGTTTTCGGGGACTTGTTATACACAGGTTCCGATAGCAAGAACATAAGGGTGTGGAAAGAATTAAAGGATTACACGGGTTTCAAATCGAGCAGTGGTTTGGTTAAAACCATAGTAATCTCCGGCGAGAAAATCTTCACCGGTCACCAAGATGGAAAGATCAGAGTTTGGAAGATTTCGTCGAAAAATCCTAGCAGCCATAAACGCATTGGAAGCTTGCCAACTTTCAAAGACTATGTCAAGAGTTCAATGAATCCCAGGAACTACGTGGAGGTGCGGCGAAACCGAAACGCGGTGAAGGTGAAGCATTTCGACGCCATTTCGAGTTTGAGCTTGGATGAGGAAGAAGGGTTGTTGTATTCTGGGTCGTGGGACAGAACGCTCAAGGTTTGGCGCGTATCGGATTCTAAGTGTTTGGAATCTGTGAACGCCCATGATGATGCTTTGAACGCGGTGGTGGCGGCGTTTGGATGCTATGTTTTCACTGGCTCCGCTGATGGGACGGTGAAGATGTGGAAGAGGGAAGGCACTGCGAAAGGGAAGAAAACAAAGCACGTGCTGGAAAAGATTCTGCTGCAGCAAGAGAACGCCGTGACGGCGTTGGCGGTGAACGGTTTGTCCACTGTGGTTTATGCTGGTTCCTCCGACGGGTTGGTGAACTTCTGGGAGCGTCACCAGAAGAACAACCTCTCCCACGGTGGCGTTCTAAAGGGACACAAGCTCGCTGTACTTTGCCTCGAGGCTGCCGGAAACCTCGTCTTCAGCGGCTCCGCCGATAAGAATGTTTGCGTGTGGAGGCGAGACGAGAATGGGGTCCACACGTGCCTTTCTGTTCTGACAGGTCACACCGGTCCCGTCAAGTGCATCGCCGTCCAAGAAGACCAAGAAGAACAACAACACCACCAGAAGGGTGATAATCAGCGGTGGATAGTTTACACCGGAAGTTTAGACAAGTCCGTGAAGGTGTGGCGCGTGTCAGAACACGCGCCGGATTTGAGAATGTTCCAAGACTGGTCGTTGCCAAATCAAGGCCTCACCCCCACCAGTCATTTTTCGCCAGGAAGAATCAATGTTGGCAATGGCAGTGATAATAGTAATACCAATAATAATAGCAATGGCATTGGTGATTACCAAAACAGGAACAGGAGACAGTTGCAAAATTTAGAAAATTAA 1569 0.4888 MTNAKVGNMLVERNSLQRPKFGAFLQHSDPTSLYSFNNDDEDLSLSHNNRLSNVSATSPRNYGADNNSSSSNNASPYLMSPLNQAPSSPYQKSPWLLPTQPINLFLHDGNDNFPQDGLIGSLVREEGHIYSLAVFGDLLYTGSDSKNIRVWKELKDYTGFKSSSGLVKTIVISGEKIFTGHQDGKIRVWKISSKNPSSHKRIGSLPTFKDYVKSSMNPRNYVEVRRNRNAVKVKHFDAISSLSLDEEEGLLYSGSWDRTLKVWRVSDSKCLESVNAHDDALNAVVAAFGCYVFTGSADGTVKMWKREGTAKGKKTKHVLEKILLQQENAVTALAVNGLSTVVYAGSSDGLVNFWERHQKNNLSHGGVLKGHKLAVLCLEAAGNLVFSGSADKNVCVWRRDENGVHTCLSVLTGHTGPVKCIAVQEDQEEQQHHQKGDNQRWIVYTGSLDKSVKVWRVSEHAPDLRMFQDWSLPNQGLTPTSHFSPGRINVGNGSDNSNTNNNSNGIGDYQNRNRRQLQNLEN* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00616 522 MobiDBLite consensus disorder prediction 51 93 - -
Rops3g00616 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 397 IPR001680 GO:0005515
Rops3g00616 522 Gene3D - 106 223 IPR015943 GO:0005515
Rops3g00616 522 FunFam BnaA09g28200D protein 222 309 - -
Rops3g00616 522 SMART WD40_4 361 398 IPR001680 GO:0005515
Rops3g00616 522 SMART WD40_4 115 152 IPR001680 GO:0005515
Rops3g00616 522 SMART WD40_4 404 456 IPR001680 GO:0005515
Rops3g00616 522 SMART WD40_4 153 190 IPR001680 GO:0005515
Rops3g00616 522 SMART WD40_4 229 264 IPR001680 GO:0005515
Rops3g00616 522 SMART WD40_4 267 305 IPR001680 GO:0005515
Rops3g00616 522 SMART WD40_4 316 355 IPR001680 GO:0005515
Rops3g00616 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 269 - -
Rops3g00616 522 CDD WD40 126 456 - -
Rops3g00616 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 305 IPR001680 GO:0005515
Rops3g00616 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 355 IPR001680 GO:0005515
Rops3g00616 522 SUPERFAMILY WD40 repeat-like 121 467 IPR036322 GO:0005515
Rops3g00616 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 273 IPR001680 GO:0005515
Rops3g00616 522 Gene3D - 360 470 IPR015943 GO:0005515
Rops3g00616 522 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 68 461 IPR045182 -
Rops3g00616 522 MobiDBLite consensus disorder prediction 478 522 - -
Rops3g00616 522 Pfam WD domain, G-beta repeat 406 455 IPR001680 GO:0005515
Rops3g00616 522 Pfam WD domain, G-beta repeat 366 397 IPR001680 GO:0005515
Rops3g00616 522 Pfam WD domain, G-beta repeat 126 152 IPR001680 GO:0005515
Rops3g00616 522 Pfam WD domain, G-beta repeat 269 305 IPR001680 GO:0005515
Rops3g00616 522 Pfam WD domain, G-beta repeat 235 263 IPR001680 GO:0005515
Rops3g00616 522 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Rops3g00616 522 PRINTS G protein beta WD-40 repeat signature 251 265 IPR020472 -
Rops3g00616 522 PRINTS G protein beta WD-40 repeat signature 443 457 IPR020472 -
Rops3g00616 522 Gene3D - 224 359 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00616 Rops-Chr3 7669292 7671481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00616 139 461 Acyl Lipid Metabolism Gene Families AT3G18860 25.455 6.99e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00616 - - gmx:100790597 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00616 3 7669292 7671481 Rops3g00616 3 7669292 7671481 ECH