Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00592 ATGGCTATCTGCTCGCTTCTTTGCCGTATTCCGGCGACTCGCACTGACATAACTTTGCCGGAGAGTGTTAGTAGAAACCGGTGCCGGAAACCGTTCTCCGTTCGTTGCTCCGGCGATTCCGATTTTGATGCGAAGGTGTTTCGCCATAACCTCACGAGGAGTAAGAATTATAACCGCAGAGGCTTTGGATACAAAGACGAAACCCTTCAACTTATGAATCGCGAGTACACAAGTGACATCATTAAGACTTTGAAGGAAAATGGGTATGAGTATACGTGGGGTAATGTCACGGTGATGCTGGCTGAAGCCTATGGTTTCTGTTGGGGAGTTGAGAGGGCCGTTCAAATTGCTTATGAGGCGAGAAAACAGTTTCCTAATGAGACGATATGGCTTACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGCCTAGAGGAGATGGAAGTACAGAATATTCCTGTGGAGGAAGGAAACAAACATTTTGAAGTTGTCAACAAGGGTGATGTAGTTATATTGCCTGCTTTTGGAGCAGCAGTGGATGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATTGTGGATACAACTTGCCCATGGGTTTCAAAGGTGTGGAATACTGTTGAAAAACACAAGAAAGGAGATTATACCTCGATTATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACGGCATCTTTTGCTGGAAAGTATATTATTGTGAAGAATATGGCAGAGGCTGAATATGTTTGCGATTATATTCTTGGTGGTGAATTTAACGGATCTAGTTCAACCAAAGAGGCATTTTTAGAGAAATTTAAATTTGCAGTTTCAAAGGGCTTTGATCCAGACAATGACCTAATAAAATTAGGCATCGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAAATTGGGAAACTAGTGGAGAGAACTATGATGCGCAAATTTGGTGTGGAAAACGTCAATGAGCACTTCATTAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGGCAAGATGCTATGTACAAGCTGGTGGAGAAAGATATGGATCTTATGTTAGTAGTTGGTGGCTGGAACTCGAGCAATACATCACACCTGCAAGAGATAGCTGAGGAACGTGGAATTCCTTCTTACTGGATTGATAGTGAGCAAAGAATTGGACCAGGAAACAGAATAGCATACAAGTTGAATCATGGTGAGCTGGTGGAGAAAGAAAACTGGCTGCCAGGGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCGGACAAGGTTGTTGAAGATGTGCTTATCAAGGTGTTTGACTTGAAACGGGAAGAAGCATTGCAACTCGTGTAG 1356 0.427 MAICSLLCRIPATRTDITLPESVSRNRCRKPFSVRCSGDSDFDAKVFRHNLTRSKNYNRRGFGYKDETLQLMNREYTSDIIKTLKENGYEYTWGNVTVMLAEAYGFCWGVERAVQIAYEARKQFPNETIWLTNEIIHNPTVNKRLEEMEVQNIPVEEGNKHFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGEFNGSSSTKEAFLEKFKFAVSKGFDPDNDLIKLGIANQTTMLKGETEEIGKLVERTMMRKFGVENVNEHFISFNTICDATQERQDAMYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPGGPITIGVTSGASTPDKVVEDVLIKVFDLKREEALQLV* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00592 451 CDD lytB_ispH 98 436 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Rops3g00592 451 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 96 443 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Rops3g00592 451 Gene3D - 332 450 - -
Rops3g00592 451 Gene3D - 107 197 - -
Rops3g00592 451 Pfam LytB protein 98 437 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Rops3g00592 451 Gene3D - 198 331 - -
Rops3g00592 451 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 30 449 - -
Rops3g00592 451 NCBIfam 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 98 438 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00592 K03527 - gmx:100818067 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00592 3 7465643 7469228 Rops3g00592 3 7465643 7469228 ECH