Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00581 ATGGTAGCTCAAGCAGTGTCAGTGCCTGCGAGTGCCAGCTTCACTATCGCTTCTCGCAGGAGAAGTCCTTCCCAGTTTGCGTTTTCTCACAGAAACCAGTGCTCGATAGTTTCTTCCTTTCCAAGCCCCTATGGTCATTCATCAAAAGTTGGGTTGTCAAGTACAAGCCGTGGTTTTGGTTTAAAACTTGATGAGAAAAATACCCTTGAGACTAGTACAAGTTATGGTGCAATTGAAGCCAAGAAGGGGAATCCACCAATAACACCAGCGGTGATGACTCCTGGAGGACCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAATTCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCCACTATTGATGCAAATGCAGATATACTGATGTATATCAATTGCCCTGGTGGAAGCACATATTCTGTATTGGCAATTTATGATTGCATGTCTTGGATAAAACCGAAGGTCGGTACAGTATGTTTTGGTGTAGCTGCAAGCCAAGGTGCACTTCTCCTTGCAGCTGGGGAGAAGGGAATGCGCTATGCAATGCCAAATGCTCGCATAATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTGAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTCACCGGACAGCCATTAGAGATGGTGCAACAGTACACAGAGAGGGATCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTATTGGAAACAGAGTATTGA 825 0.4448 MVAQAVSVPASASFTIASRRRSPSQFAFSHRNQCSIVSSFPSPYGHSSKVGLSSTSRGFGLKLDEKNTLETSTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDANADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAAGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEMVQQYTERDRFLSVSEALEFGLIDGVLETEY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00581 274 Gene3D - 78 274 - -
Rops3g00581 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 72 273 IPR023562 -
Rops3g00581 274 FunFam ATP-dependent Clp protease proteolytic subunit 79 274 - -
Rops3g00581 274 Pfam Clp protease 99 272 IPR023562 -
Rops3g00581 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Rops3g00581 274 SUPERFAMILY ClpP/crotonase 98 272 IPR029045 -
Rops3g00581 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00581 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00581 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00581 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00581 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00581 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Rops3g00581 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00581 Rops-Chr3 7225437 7229222 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00581 K01358 - gmx:100799710 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00581 3 7225437 7229222 Rops3g00581 3 7225437 7229222 ECH