Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00578 ATGGAGGAGAAACGCCGCGACGCCGCGTCTCACCCTCCCTCCACCGTCGATTCGCCGGCATCGGAGCCCGTTTCATCTCGCCGCCGTGCCGGAGGCAACAAGAGGAAGGCCAGCGCTCTCAACGTCTCCAATTCCTCATCCACACCCTCCAAACGCATTACTCGTGAGAAGGCCACGCCTCTTAACGCTCCTCCTCTTCACAATGGTCCCTTGACTAGGGCTCGTCAAATCCCTAGCAACCTCGCCGCCGCATCGTCTTCGCCGTACGGCAGTGGTTCCGCTTCTGCTCCCGCCGCTGTGAAACACTCCGAACGTGCCCAGGGTTTGGGTGGAGATTCGGTGGCGCTTGCGGAGCAACTCAAGAAGGAGAGTGAGTGGGAGTCTCTGGAGGCTTCGATTGAAGCTGAATTCGAAGCTATCAGATCTCGTGGTACCAATGCTCATGTTGTTCCTACTCATTGTGGTTGGTTTTCATGGTCTCATATCCATCCAATTGAGCAGCGTTTGATGCCTTCTTTCTTTAATGGCAAAACTGAAAATCGAACTCCTGATATATACATGGAGATACGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAACATACAAATTGAAGTGAAAGATTTGTCAGAGCTTAATGTTGGAGACTTGGATGCTAGGCAAGAGATAGTGGAGTTTCTGGACTATTGGGGTTTAATTAACTTCCATCCATTCCCTTCGATGGATTCTGCTGTGGCCAGCACCAGTGATGATGGGGAAGCAGAAAAAAATTCCTTGCTTGAAAATTTGTATCACTTTGAAACTCTCCAATTATGTCCACCTGTTGTTCAAAAGACTAGCCTAATTACTCCGGCTATGACCTCTGGCTTGTTTCCAGAGCCTACAATTGCTGAAGAGTTGGTGAAACAAGAGGGCCCAGCAGTTGAGATACTTGAGTACCATTGCAACTCTTGTTCTGCTGATTGTTCTCGTAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGTTCGGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCCTCCTTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTCAGTGGTGGAAACTGGACTGATCAGGAGACCCTTTTGCTGCTTGAAGCATTAGAACTTTATAAAGAAAATTGGAATGAAATTGCAGAGCATGTTGGAACTAAATCAAAAGCTCAGTGCATATTACACTTTGTTCAAATGCCAATTCAGGATGCCTTTGTTGATTGTGATGATGATGTTGATGCCAGTTGCAAAGATACTGCAGATCCAGTTGCAACAAACAATGATTCATCTGTAGACAAAGATGCTTCAGAATTAATTGACAATGACACTAATGATAGCATCAAAGGCCATGATGGAACTTCCAAGGCTGAAGATGATAAAATGAAAGTAAATCAGGAGACCCCAAAGTTACAAGATGGTAGTGATGAGAAAACTAGTGAGGGAACTTCTAAATCAGAAGATGCTGTTAAAGTAAAATTTGGTCAGGAAGTGGGCAATGACTGTGCTCTAAATGCTCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCATCTTCATTTTCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTCCTTGCACACTTGGTGGGTCCTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATAAAATCCATGTCTGGAAACTCTCCTGGCACTGAGCTTGCTGCAAGGTGTTGCTTTCTTCTGGAAGACCCCCCAAATAATAAAAAGGAACCAGCTGGTTCTGAGAGGGATTCTAAAAGTGAGGGAGATCAGGATGACAGAAATGTAAAACAGGATAAACTGATGATAGATGATAAAGATTTAGCAAATGATCACAGTAACATGAAAATTGATAGCAATGCTTCAGAAGACAAGAGGAAGCTGGCTTCTACAGATGATGGAGCCCCAGAAAAACCAATTTCCTCAAAGGAGCTAGCAATTATTAATCATGAGGGTGGGGTTGACAATTGTAATGATCCCGGCAATACAAAGCTAACCAATGATCAGGCCCCGGGCACTCTGCATGATTCGAGTGGTTCAACATCCAAGGCTGAAATTCCACCTAGTTGTGAGGAGCTTCGGGAGAAAACTTTAATTGAAGAACCTTGCCATCCTGAAGAGGAACAAAATGACAGATGTGTGTCTGATTCTCGTCCATCAGAAAAGAAAGAACTTCAACAGTCAATTAAATCCAATTTACCAGGAGACCATCCAGAGCAAGTAGAGACACCAAAAGATGCTGAGATGGTGTCTGATTCTATTCCCTCAGATAAGAGCAAACCTCAAAAACTGGTATCAGCGAATCCGGATTCTGTAATTGATGTTGATATAGTTTCTAATTCCTTGCCATCGGAGAAGATCGACTCTCAGCCAGTAATCACACCAATGTCATCCCAGTCTAATGGGACAGAAAAGGATGTAGATACGATGCCACCTTCTCGTCCAGTTAGATCTAATTCTGGTGCTGAAAATGGTGCAAATACAGGGGCAGGTGAAGATCATGCTCAAAATGGTACAAAAGTGAAAGATGATGATACAAGGACTAAGCAGGATAATGATTTTGAGAAATTGAAACGTGCTGCAGTTTCTACACTTGCTGCAGCAGCAGTAAAGGCAAAACTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAACTTACTTCTTCGTTGATAGAAAAGCAGTTGCATAAGTTGGAAACAAAATTGGCTTTTTTCAATGATATGGAGAATGTGGTGATGAGGGTAAGGGAGCATTTAGAGCGGTCACGCCATAAGCTTTACCATGAGCGTGCTCTGATAATTGCATCCCGACTTGGTTTACCAGCTTCCTCATCCAGAGGTGTACCACCATCCATACCGACCAATAGAATTCCTATGAATTTTGCAAACTCACTCCCAAGACCGCAAATCATGATGAATCCCCAAAGGCCACTGATTTCTAGACCTGTGGGCTCTGTAGCTAGTATTCCAAACCCATTAACATCTGCAACTGCAGCAGGAAATTCAGTTCGGCCATCTAGCCAGGAAAAGCTTTCTTCTGTTGGGACTAAATAA 3123 0.4416 MEEKRRDAASHPPSTVDSPASEPVSSRRRAGGNKRKASALNVSNSSSTPSKRITREKATPLNAPPLHNGPLTRARQIPSNLAAASSSPYGSGSASAPAAVKHSERAQGLGGDSVALAEQLKKESEWESLEASIEAEFEAIRSRGTNAHVVPTHCGWFSWSHIHPIEQRLMPSFFNGKTENRTPDIYMEIRNWIMKKFHSNPNIQIEVKDLSELNVGDLDARQEIVEFLDYWGLINFHPFPSMDSAVASTSDDGEAEKNSLLENLYHFETLQLCPPVVQKTSLITPAMTSGLFPEPTIAEELVKQEGPAVEILEYHCNSCSADCSRKRYHCQKQADFDLCSDCFSNRRFGSGMSSLDFILMEPAEVAGVSGGNWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIQDAFVDCDDDVDASCKDTADPVATNNDSSVDKDASELIDNDTNDSIKGHDGTSKAEDDKMKVNQETPKLQDGSDEKTSEGTSKSEDAVKVKFGQEVGNDCALNALKEAFAAVGYSPEPEGPSSFSEVGNPVMALAAFLAHLVGPDVAVASAHSSIKSMSGNSPGTELAARCCFLLEDPPNNKKEPAGSERDSKSEGDQDDRNVKQDKLMIDDKDLANDHSNMKIDSNASEDKRKLASTDDGAPEKPISSKELAIINHEGGVDNCNDPGNTKLTNDQAPGTLHDSSGSTSKAEIPPSCEELREKTLIEEPCHPEEEQNDRCVSDSRPSEKKELQQSIKSNLPGDHPEQVETPKDAEMVSDSIPSDKSKPQKLVSANPDSVIDVDIVSNSLPSEKIDSQPVITPMSSQSNGTEKDVDTMPPSRPVRSNSGAENGANTGAGEDHAQNGTKVKDDDTRTKQDNDFEKLKRAAVSTLAAAAVKAKLLANQEEDQIRQLTSSLIEKQLHKLETKLAFFNDMENVVMRVREHLERSRHKLYHERALIIASRLGLPASSSRGVPPSIPTNRIPMNFANSLPRPQIMMNPQRPLISRPVGSVASIPNPLTSATAAGNSVRPSSQEKLSSVGTK* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00578 1040 ProSiteProfiles SWIRM domain profile. 148 245 IPR007526 GO:0005515
Rops3g00578 1040 CDD ZZ_RSC8 314 358 IPR041984 -
Rops3g00578 1040 PANTHER SWI/SNF COMPLEX-RELATED 33 959 - -
Rops3g00578 1040 FunFam SWI/SNF complex subunit SMARCC2 isoform C 369 419 - -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 448 502 - -
Rops3g00578 1040 CDD SANT 389 414 IPR001005 -
Rops3g00578 1040 ProSiteProfiles Myb-like domain profile. 371 415 IPR001005 -
Rops3g00578 1040 Pfam SWIRM domain 151 236 IPR007526 GO:0005515
Rops3g00578 1040 Pfam SWIRM-associated region 1 887 963 IPR032451 -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 591 874 - -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 1 107 - -
Rops3g00578 1040 ProSiteProfiles SANT domain profile. 368 419 IPR017884 -
Rops3g00578 1040 SUPERFAMILY Homeodomain-like 368 420 IPR009057 -
Rops3g00578 1040 Pfam Zinc finger, ZZ type 313 348 IPR000433 GO:0008270
Rops3g00578 1040 SUPERFAMILY Homeodomain-like 155 237 IPR009057 -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 598 662 - -
Rops3g00578 1040 SUPERFAMILY RING/U-box 308 351 - -
Rops3g00578 1040 Gene3D - 368 419 - -
Rops3g00578 1040 Gene3D - 154 239 IPR036388 -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 711 748 - -
Rops3g00578 1040 Gene3D - 310 358 IPR043145 -
Rops3g00578 1040 SMART zz_5 310 354 IPR000433 GO:0008270
Rops3g00578 1040 MobiDBLite consensus disorder prediction 37 55 - -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 859 874 - -
Rops3g00578 1040 SMART sant 369 417 IPR001005 -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 682 708 - -
Rops3g00578 1040 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 371 419 IPR017930 -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 796 857 - -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 73 93 - -
Rops3g00578 1040 MobiDBLite consensus disorder prediction 1010 1040 - -
Rops3g00578 1040 ProSitePatterns Zinc finger ZZ-type signature. 316 342 IPR000433 GO:0008270
Rops3g00578 1040 MobiDBLite consensus disorder prediction 434 502 - -
Rops3g00578 1040 Pfam Myb-like DNA-binding domain 371 413 IPR001005 -
Rops3g00578 1040 ProSiteProfiles Zinc finger ZZ-type profile. 311 365 IPR000433 GO:0008270
Rops3g00578 1040 MobiDBLite consensus disorder prediction 1005 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00578 Rops-Chr3 7174113 7182648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00578 314 446 EF-hand Containing Proteins AT3G07740 33.803 8.55e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00578 K11649 - gmx:100799723 1521.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00578 3 7174113 7182648 Rops3g00578 3 7174113 7182648 ECH