Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00575 ATGGCTCAGCCGCTTATTAAGAAGGACGATGACCGGGATGACGAAGCCGAGTATTCACCTTTTTTGGGAATTGAGAAGGGGGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTACTAAATCAGGGAGAGACATTTACAAAGATCGAAGCCACAGAAGTTTTCTTTTCTGTCACCAAGCTTTTCCAGTCTCGAGATCTTGGGTTAAGGAGAATGGTCTACCTGATAATAAAGGAACTCTCCCCTTCTGCAGATGAGGTTATTATCGTCACGAGCTCTCTCATGAAGGACATGAATAGCAAGACAGATATGTATAGGGCAAATGCCATTCGTGTGCTTTGTCGTATCACAGATGGAACTCTCCTTACCCAAATTGAGCGATATTTGAAACAAGCAATTGTAGATAAGAATCCAGTCGTTGCAAGTGCAGCCCTAGTTAGTGGCATTCATATACTCCAGACAAATCCTGAGATTGTAAAAAGGTGGAGCAACGAGGTTCAGGAAGCTGTTCAGTCAAGAGCAGCTCTTGTACAATTTCATGCACTGGCTTTGCTGCATCAGATACGGCAGAATGATCGACTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAAATGTTCGCTCACCTTTGGCCCAATGCCTTCTGATCCGTTATACAAGTCAGGTTATTCGTGAATCTGGAAATAATACACAATCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCTGCTAAGGCAATTACAGAACTCAATGGTGTAACTAGTCGAGAATTAACTCCAGCAATTACTGTTCTTCAGCTCTTCTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCAGTCACTAATTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCTATTACTACTCTTTTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAATTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTGTGCTTGAAGTTTCCTTTGAAATATAGATCTCTGATGAATTTCCTGAGTAACATTCTCAGGGAAGAAGGTGGTTTCGATTACAAGAAAGCAATTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATATTGCACTTCCTGGGAGTTGAAGGACCAAAAACATCAGACGCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCAACTGTCAGGGCCAGTGCTGTGAGCACGCTGGCACAGTTTGGTACTGCAGTTGATGCATTAAAGCCCCGCATATTTGTGCTGCTAAGGCGATGCCTTTTTGACAGTGATGACGAGGTTCGTGATAGAGCAACTCTTTATCTGAACACACTAGGAGGTGTGGGTTCAGTTTTTGAGACTGATAAAGATGTAAAGGATTTCCTCTTTGGGTCACTTGATATCCCACTTGCCAACCTGGAGACTAGTTTGAAAAACTATGAGCCTTCAGAAGTGGCTTTTGACATTAATTCAGTGCCCAGGGAGGTCAAGTCTCAGCCTCTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCTAGTGGCCCCTCATCTACTGCAGATTCATATGAAAGGCTGCTTCTGTCCATTCCTGAATTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCAGCACCTGTGGAGCTTACAGAAGCAGAGACGGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATGTTGTGTTTCAGTACAACTGCACAAACACAATACCAGAACAACTATTGGAAGATGTTATTGTAATTGTGGATGCTTCAGAAGCAGAAGAATTTTCCGAGGTGTTCTCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCCGAGGGATTGCCATCAGCAGGAAAATTTTCTAATGTTCTGAAATTTATTGTTAAAGAGGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGTGTCGAAGATGAATACCAGCTGGAGGATCTGGAGGTTGTTGCAGCAGATTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAATGCATGGGAAAGCATGGGCCCTGATTGTGAACGAGTGGATGAATATGGTCTTGGCCCAAGGGAAAGCTTGGCTGAAGCTGTAAATACTGTCATCAATCTTCTTGGCATGCAGCCTTGTGAGGGCTCAGAGGTAGTCCCACCCAATTCAAGGTCACACACATGCTTATTGTCGGGTGTATTCATAGGGAATGTGAAGGTGCTTGTGCGGTTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCAATGAAACTGGCTGTCAGATCCGAGGATGAAAATGTCAGCGATGCCATTCATGAGATTGTGGCAAGCGGTTAG 2664 0.4291 MAQPLIKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKIEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHILQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGNVRSPLAQCLLIRYTSQVIRESGNNTQSGERPFYDYLESCLRHKSEMVIFEAAKAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDASKYIRYIYNRVHLENATVRASAVSTLAQFGTAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGVGSVFETDKDVKDFLFGSLDIPLANLETSLKNYEPSEVAFDINSVPREVKSQPLAEKKAPGKKPTGLGAPPSGPSSTADSYERLLLSIPEFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGLPSAGKFSNVLKFIVKEVDPTTGEAEDDGVEDEYQLEDLEVVAADYILKVGVSNFRNAWESMGPDCERVDEYGLGPRESLAEAVNTVINLLGMQPCEGSEVVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLAVRSEDENVSDAIHEIVASG* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00575 887 PANTHER COATOMER SUBUNIT GAMMA 1 885 IPR017106 -
Rops3g00575 887 MobiDBLite consensus disorder prediction 592 621 - -
Rops3g00575 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Rops3g00575 887 SUPERFAMILY Clathrin adaptor appendage domain 617 771 IPR013041 -
Rops3g00575 887 Gene3D - 23 316 IPR011989 -
Rops3g00575 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Rops3g00575 887 FunFam Coatomer subunit gamma 333 541 - -
Rops3g00575 887 Gene3D - 335 552 IPR011989 -
Rops3g00575 887 FunFam Coatomer subunit gamma 769 885 - -
Rops3g00575 887 PIRSF Gamma-COP 7 885 IPR017106 -
Rops3g00575 887 Gene3D - 769 885 IPR012295 -
Rops3g00575 887 Gene3D Coatomer, gamma subunit, appendage domain 616 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Rops3g00575 887 FunFam Coatomer subunit gamma 23 316 - -
Rops3g00575 887 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Rops3g00575 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Rops3g00575 887 FunFam Coatomer subunit gamma 615 768 - -
Rops3g00575 887 SUPERFAMILY ARM repeat 29 540 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00575 Rops-Chr3 7160878 7168202 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00575 K17267 - gmx:100789362 1660.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00575 3 7160878 7168202 Rops3g00575 3 7160878 7168202 ECH