Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00574 ATGAGAAGGTGGGAGGGGTATGGTGGTGGAGGATCCCGAGGTGGAGGTGGGAGTAGTGGGGTGGTGGAAGCGGTGGACCGACAAGCATACCGGCTGTGGAAGGGGCAAAAGGAGCGTCACTCTGCTGCCACCGACACCGTCAACAATCTCCGGGAGCGGTTAAAGCAGAAGCGCCTTGCTTTGCTTGATACAGATATTTCTGGGTATGCCAAGTCTCAGGGTAAAACTCCTGTGAGCTTTGGACCCACGGATCTGGTTTGCTGTAGAACTTTACAGGGTCATACTGGAAAGGTGTATTCATTGGATTGGACTTCTGAAAAGAATCAGATTGTTAGTGCATCCCAAGATGGCCGATTAATAGTGTGGAATGCTCTAACACGGCAGAAGATTCATGCCATAAAGTTGCCTTGTGCATGGGTCATGACATGTGCTTTCTCACCAACTGGTCAGTCTGTTGCATGTGGTGGTCTTGACAGTGTTTGCTCTATTTTCAATCTTAATTCCCCTAATGACAAGGATGGGAATCTGCCTGTTTCCCGGATGCTTAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCTGATGAAGACACTCACTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTACCACTGGCCTTAAAACATCTGTCTTTGGAGGTGAATTTCAGTCTGGACATACTGCAGATGTACTTAGCATCTCCATTAATGGATCCAACTCAAGAATGTTTGCATCTGGTTCTTGTGATGCAACTGCTCGATTGTGGGATACTCGAGTAGCAAGTCGATCGGTACGCACATTCCACGGGCATGAGGGAGATGTTAATGCAGTCAAATTTTTTCCAGATGGAAATAGATTCGGAACTGGCTCAGACGATGGAACTTGCAGATTGTTTGACATTAGGACTGGACACCAGCTTCAAGTATATTCTCAGCAACACAGTGACAATGAAATCCCACCTGTGACCTCCATTGCATTTTCCGTATCAGGAAGACTTCTCTTTGCTGGATATGCAAATGGAGATTGCTATGTTTGGGACACTTTATTGGCCAAGGTGGTCTTGAATTTAGGATCTGTCCAAGACTCTCACGAGGGCAAGATCAGCTGTTTAGGCTTGTCAGCTGATGGAAGTGCCTTGTGTACCGGAAGTTGGGATACGAATTTAAAGATATGGGCATTTGGAGGGCATAGAAGAACTTAA 1221 0.4595 MRRWEGYGGGGSRGGGGSSGVVEAVDRQAYRLWKGQKERHSAATDTVNNLRERLKQKRLALLDTDISGYAKSQGKTPVSFGPTDLVCCRTLQGHTGKVYSLDWTSEKNQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPNDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFASGSCDATARLWDTRVASRSVRTFHGHEGDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYSQQHSDNEIPPVTSIAFSVSGRLLFAGYANGDCYVWDTLLAKVVLNLGSVQDSHEGKISCLGLSADGSALCTGSWDTNLKIWAFGGHRRT* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 406 - -
Rops3g00574 406 CDD WD40 87 399 - -
Rops3g00574 406 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 132 IPR001680 GO:0005515
Rops3g00574 406 ProSitePatterns Trp-Asp (WD) repeats signature. 202 216 IPR019775 -
Rops3g00574 406 Gene3D - 39 399 IPR015943 GO:0005515
Rops3g00574 406 FunFam Guanine nucleotide-binding protein subunit beta 34 399 - -
Rops3g00574 406 PRINTS Beta G protein (transducin) signature 91 107 IPR001632 -
Rops3g00574 406 PRINTS Beta G protein (transducin) signature 129 144 IPR001632 -
Rops3g00574 406 PRINTS Beta G protein (transducin) signature 147 164 IPR001632 -
Rops3g00574 406 PRINTS Beta G protein (transducin) signature 110 124 IPR001632 -
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 219 - -
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 315 IPR001680 GO:0005515
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 265 - -
Rops3g00574 406 SMART WD40_4 360 399 IPR001680 GO:0005515
Rops3g00574 406 SMART WD40_4 222 263 IPR001680 GO:0005515
Rops3g00574 406 SMART WD40_4 267 306 IPR001680 GO:0005515
Rops3g00574 406 SMART WD40_4 126 165 IPR001680 GO:0005515
Rops3g00574 406 SMART WD40_4 309 353 IPR001680 GO:0005515
Rops3g00574 406 SMART WD40_4 175 215 IPR001680 GO:0005515
Rops3g00574 406 SMART WD40_4 84 123 IPR001680 GO:0005515
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 91 123 - -
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 272 IPR001680 GO:0005515
Rops3g00574 406 PIRSF GNBP_B 30 401 - -
Rops3g00574 406 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Rops3g00574 406 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Rops3g00574 406 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 310 - -
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 224 IPR001680 GO:0005515
Rops3g00574 406 Pfam WD domain, G-beta repeat 180 215 IPR001680 GO:0005515
Rops3g00574 406 Pfam WD domain, G-beta repeat 87 123 IPR001680 GO:0005515
Rops3g00574 406 Pfam WD domain, G-beta repeat 270 306 IPR001680 GO:0005515
Rops3g00574 406 Pfam WD domain, G-beta repeat 312 353 IPR001680 GO:0005515
Rops3g00574 406 Pfam WD domain, G-beta repeat 369 398 IPR001680 GO:0005515
Rops3g00574 406 Pfam WD domain, G-beta repeat 231 263 IPR001680 GO:0005515
Rops3g00574 406 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 36 399 IPR016346 GO:0007165
Rops3g00574 406 SUPERFAMILY WD40 repeat-like 84 398 IPR036322 GO:0005515
Rops3g00574 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 406 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00574 Rops-Chr3 7153489 7159177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00574 152 400 Miscellaneous Gene Families AT5G08390 23.293 1.17e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00574 K04536 - gmx:100794776 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00574 3 7153489 7159177 Rops3g00574 3 7153489 7159177 ECH