Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00573 ATGGCTACACCTTCCAACCCTTCATTACTCTTCTGCCTTTCCCTCATCGCCACCACCCTCTACTTTGCTGATTCGCAATCCTTCATCGGCGTTAACTACGGCCAGGTCGCCGACAACCTTCCGCCGCCGGAGGCCACGGCGAATCTCCTCAAATCCACCACCATCGGAAAAATCAGGCTTTACGGCGCCGATCCGGCGATCATCAAGGCACTAGCAAATTCCGGCATCGGAATCGTCATCGGCGCCGCCAACGGCGACATTCCGAGTCTAGCCTCCGATCCCAACTCGGCGACTCAGTGGGTCAATGCGAACGTGTTGCCCTACTACCCTGCCAGCAACATCACTCTGATCACCGTCGGTAACGAGGTAATGACATCCGGCGACCAGGGTCTCATCTCACAGCTTCTCCCGGCGATACAAAATGTCCAAAATGCCCTTAACTCGGCCTCACTCGGTGGCAAGATCAAGGTTTCCACGGTGCATTCCATGGCTGTGTTGAGTCAGTCGGATCCTCCATCTTCCGGGTCGTTCAACCCGGATCTCCAAAACACCCTCAAACAATTGCTGGCGTTTCAGAAAAATACCAATTCACCCTTCACCATTAACCCGTACCCGTTTTTCGCTTACCAGAGTGACCCAAGACCCGAAACACTCGCATTTTGTTTGTTCGAACCAAATTCGGGTCGGGTCGACTCTGGTAACGGTAAACTTTACACGAACATGTTCGACGCTCAGGTTGATGCTGTACATTCTGCTTTGAGTGCTATGGGCTTTCAGGACATTGAGATTGTGGTTGCTGAGACAGGGTGGCCTTCTCATGGAGACAGCAATGAAGTGGGACCAAGTATTGAAAATGCCAAGGCCTATAATGGGAACCTAATTGCACACCTTAGATCATTGGTTGGAACTCCTTTGATGCCTGGGAAATCAGTGGACACCTACATTTTTGCACTTTATGATGAGGATTTGAAACCTGGCCCAGGATCTGAACGTGCATTTGGTCTCTTCAAAACTGATCTTACCATGGCATATGATATTGGCCTAGATAAGTCTAGCCAAAAGACTCCACCAACTAGTCCAAAAGCTCCAGTTGGTCCAGCACCTAAAACAGCAACACAATGGTGCATTCCAAAAGTGGGAGTCACTGAAGCTCAGCTGCAGGCAAATATTGACTATGTCTGTAGTAGACAAGGCATAGATTGTGGGACAATTCAACCAGGAGGTGCATGTTATGAACCTAACACAGTAGCATCTCATGCTGCATTCGCCATGAATCAATATTACCAAAAGTTTGGTAGAAATCCATGGAACTGTGATTTCTCTCAAACAGCAATTCTTACATTCCAAAATCCAAGTTACAATGCTTGCAATTATCCAACTGGGAGTCCCTGA 1392 0.4871 MATPSNPSLLFCLSLIATTLYFADSQSFIGVNYGQVADNLPPPEATANLLKSTTIGKIRLYGADPAIIKALANSGIGIVIGAANGDIPSLASDPNSATQWVNANVLPYYPASNITLITVGNEVMTSGDQGLISQLLPAIQNVQNALNSASLGGKIKVSTVHSMAVLSQSDPPSSGSFNPDLQNTLKQLLAFQKNTNSPFTINPYPFFAYQSDPRPETLAFCLFEPNSGRVDSGNGKLYTNMFDAQVDAVHSALSAMGFQDIEIVVAETGWPSHGDSNEVGPSIENAKAYNGNLIAHLRSLVGTPLMPGKSVDTYIFALYDEDLKPGPGSERAFGLFKTDLTMAYDIGLDKSSQKTPPTSPKAPVGPAPKTATQWCIPKVGVTEAQLQANIDYVCSRQGIDCGTIQPGGACYEPNTVASHAAFAMNQYYQKFGRNPWNCDFSQTAILTFQNPSYNACNYPTGSP* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00573 463 FunFam glucan endo-1,3-beta-glucosidase 7 369 459 - -
Rops3g00573 463 Gene3D - 369 460 - -
Rops3g00573 463 Pfam X8 domain 373 444 IPR012946 -
Rops3g00573 463 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 446 IPR044965 GO:0004553|GO:0005975
Rops3g00573 463 SMART X8_cls 373 458 IPR012946 -
Rops3g00573 463 Gene3D Glycosidases 28 355 - -
Rops3g00573 463 Pfam Glycosyl hydrolases family 17 29 346 IPR000490 GO:0004553|GO:0005975
Rops3g00573 463 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Rops3g00573 463 SUPERFAMILY (Trans)glycosidases 29 347 IPR017853 -
Rops3g00573 463 FunFam Glucan endo-1,3-beta-glucosidase 14 27 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00573 Rops-Chr3 7148503 7152031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00573 23 459 Miscellaneous Gene Families AT2G16230 66.819 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00573 - - gmx:100778892 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00573 3 7148503 7152031 Rops3g00573 3 7148503 7152031 ECH