Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00568 ATGGCGGAAGAAGCAGTTCTTGGTTACTTGGAAAACAATGAGGAGATTAAAGATTCAGGTGTGTTTGCAGCAGAACGTGACATTGATCATAACGAGATAGTGAACGTGATTAAGAGCCTCCATGGTTTCAGATACGTCGATGCCCAGGACATTAAGCGTGAGACATGGGTGCTCACTGATGAAGGGAAGACATATGCAGCTACAGGATCCCCTGAAGTTCAACTTTTGTTGGCTATTCCACCAGAGGGTATCTCTAAGGATGAACTTCAGAAAAAGCTGGATCCTTCACTCTTCAAGATTGGTTGTGCCCAGGCTGCAAAGAACAAATGGTTGGAGATGGGAAAACAGCTTATATCTAGAAAGGTCCAACATGTGGAAGACAGAGTCAAAGACCTGCTTCTTCAAATACAACAGGGACAGGGCATTGGTTCGGATGATATTAAAGCACTCAAAACAAGAAAGCTTATTGTTCCACAGACATGGAAGGGTTACTCGGTGAAAAAGGGTCCTAACTATGCGCCAAAAAGAAAGAAGGTTGTCACTGATTTAACTCGAGATAATTTTCAGAGTGGTGAGTGGAAGGAATTAGAGTTCAAAGAGTACAATTACAGTGCTAAAGGTCAGCCTCTTGAGGGTGGCCATCTTCATCCATTGCTGAAGGTACGGCATCAACTGAAACAGATTTTCCTCTGCATGGGATTTGAGGAGATGCCGACAAATAATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAACAGCACCCAGCTCGTGATTCGCATGACACTTTTTTTTTGGAAGCTCCTTCAACAACAAAGAAACTGCCTGAAGATTATGTTCAGCGGGTGAAGCAAGTTCATGAATCTGGTGGTTATGGATCGAGGGGATATGTGTATGACTGGAAAAGAGAGGAAGCAAATAAAAACCTCCTGCGGACCCACACAACTGCTGTTTCCTCCAGGATGCTTTACCAGCTGGCACAGAAACCATTTTCTCCGAAAAAATATTTCTCTATAGATCGTGTATTCAGAAATGAAGCAGTTGATCGAACACATCTAGCTGAATTCCACCAGATCGAAGGCCTTGTATGCGATCGAGGGCTCACTCTCTCTGACTTAATAGGAGTTCTACACGATTTCTTCGCACGCTTGGGTATGGCCAAGCTGAAGTTCAAACCAGCTTACAATCCATACACCGAACCTAGCATGGAGATTTTCAGTTATCATGAAGGCTTTAAAAAATGGGTAGAGATAGGAAACTCTGGCATGTTTAGACCTGAAATGTTGCAGCCGATGGGACTTCCAGAGGATGTCCAAGTAATTGCATGGGGTCTTTCCCTTGAAAGGCCAACGATGATACTATATGGGATAGATAACATCAGAGATCTCTTTGGACCCAAGGTGGATCTCGCCCTTATGAAGAAAAATCCATTGTGTCGTCTTGGAATTGACTAA 1467 0.4369 MAEEAVLGYLENNEEIKDSGVFAAERDIDHNEIVNVIKSLHGFRYVDAQDIKRETWVLTDEGKTYAATGSPEVQLLLAIPPEGISKDELQKKLDPSLFKIGCAQAAKNKWLEMGKQLISRKVQHVEDRVKDLLLQIQQGQGIGSDDIKALKTRKLIVPQTWKGYSVKKGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGHLHPLLKVRHQLKQIFLCMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLEAPSTTKKLPEDYVQRVKQVHESGGYGSRGYVYDWKREEANKNLLRTHTTAVSSRMLYQLAQKPFSPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLSDLIGVLHDFFARLGMAKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEIGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGPKVDLALMKKNPLCRLGID* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00568 488 Gene3D - 7 199 - -
Rops3g00568 488 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Rops3g00568 488 PANTHER PHENYLALANYL-TRNA SYNTHETASE 53 477 - -
Rops3g00568 488 Gene3D - 58 156 - -
Rops3g00568 488 Gene3D - 71 125 - -
Rops3g00568 488 FunFam Phenylalanine--tRNA ligase alpha subunit, cytoplasmic 71 125 - -
Rops3g00568 488 CDD PheRS_alpha_core 216 473 - -
Rops3g00568 488 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 221 470 IPR006195 -
Rops3g00568 488 NCBIfam phenylalanine--tRNA ligase subunit alpha 165 473 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Rops3g00568 488 Pfam tRNA synthetases class II core domain (F) 201 473 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Rops3g00568 488 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Rops3g00568 488 SUPERFAMILY Class II aaRS and biotin synthetases 201 472 IPR045864 -
Rops3g00568 488 FunFam Phenylalanine--tRNA ligase alpha subunit 216 487 - -
Rops3g00568 488 Gene3D Bira Bifunctional Protein; Domain 2 216 487 IPR045864 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00568 K01889 - gmx:100792325 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00568 3 7091490 7097456 Rops3g00568 3 7091490 7097456 ECH