Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00548 ATGGCAAGCCACATGATTGTTGCATGGGAACAATGGGAAGGGTCAGCCACAAACACAGGATTTGATGGTGGGCCATTGGGGTCCATTGATAAAGGACTAAATGGTGTGGTGGGTCCTAGCTTTTATTCTCTTCAGCTTCCTTGCTTGAACTTCAAAGTACAAACTTTTGAGTTTGGCTATTTGAAAGGACTTGAATTGCTGATCCATTATCATCTGGGGGCATCTGAAATCTTGTTCTCTCTTAGCATTGAGGCCACCACAATGGTGTCTGCTTGTGTGACATTGAAAACCAATACCCCTTTAGCAAACTCAAGAAAAGACAATACTTTTCGTCAAGGTGATGGCTTTCTAGGAGAGAGAATCAAAGGGAGTCTGAGTTACAGTCCCTGGATCATTAATCAGTTGGCCACAAGTTTAAGAACCAAGGAGAAGGTGAAGAAAGCCAAACCTGGTGTTGTATCTGCTGTTCTTACATCAAATAATCCCAAAGAATCTGTGACCTTTCAAGTGCCAACGTTTCTCAGAAGAAAGGCTGACCCAAAAAATGTTGTTTCCATCATATTGGGAGGAGGTCCTGGGATTCAACTTTTTCCTCTTACTAAAAGAGCTGCCACACCTGCTGTCCCTGTTGGTGGATGCTACAGGCTTATAGACATCCCAATGAGCAACTGCATCAACAGTGGCATTAACAAAGTATTTGTACTGACTCAGTTCAACTCTGCATCACTGAACCGTCACATAGCCCGTACCTATTTTGGAAATGGCGTCAACTTTGGGGATGGATATGTGGAGGTTCTGGCGGCTACCCAAACACAAGGAGAAGCTGGAAAGAAGTGGTTCCAAGGAACCGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAGCATACAAATGTTGAGAATGTGTTGATCTTGTCTGGAGATCATTTATACCGAATGGATTACATGGACCTTGTGCAGAGTCACGTTGACAGAAATGCAGATATTACAGTATCATGTGCTGCTGAAGGTGACAGCCGTGCATCAGATTATGGATTGGTCAAGGTAGATGGCAGAGGTCGCATTATCCAATTCTCAGAAAAACCCAAGGGTGCTGATCTCAAAGCAATGCAAGCAGATACCTCTCTTCTCGGATTGTCACCCCAAGAAGCATTAAGGTCACCATATATTGCATCTATGGGGGTTTATGTTTTCAAGACAGATGTTTTACTCAAACTTCTGAAATGGAGGTATCCTACATCCAATGACTTCGGATCTGAAATCATTCCTGCATCTGTGAGGGAACACAATGTCCAATCCTATTTTTTCGATGACTATTGGGAAGATATTGGAACCATAAAATCATTCTACGATGCTAACTTGGCTCTTACTGAAGAGAATCCAAGGTTCAAATTTTATGATCCAAAGACACCCATTTACACATCTCCAAGATTTTTACCACCAACTAAGATTGATAAATGCCGGATTGTGGATGCCATAATCTCCCATGGATGTTTCCTGAGAGAATGCACTGTCCAACATTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGCGTTGAGCTCCAGGACACTGTAATGATGGGAGCAGACTATTACCAAACTGAATCCGAAATTGCTTCTCTGCTGGCAGAGGGGAAGGTTCCCATTGGGATTGGAAGGAACACCAAAATTAGGAACTGTATAATTGACAAGAATGCAAAGATTGGGAAAGATGTCATCATCATGAACAAAGATGGTGTTCAAGAAGCAGATAGAGCAGAAGATGGATTTTACATTCGATCAGGAATCACCATCATAATGGAGAAGGCAACAATAGAAGATGGCACTGTCATATAA 1848 0.4253 MASHMIVAWEQWEGSATNTGFDGGPLGSIDKGLNGVVGPSFYSLQLPCLNFKVQTFEFGYLKGLELLIHYHLGASEILFSLSIEATTMVSACVTLKTNTPLANSRKDNTFRQGDGFLGERIKGSLSYSPWIINQLATSLRTKEKVKKAKPGVVSAVLTSNNPKESVTFQVPTFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKVFVLTQFNSASLNRHIARTYFGNGVNFGDGYVEVLAATQTQGEAGKKWFQGTADAVRQFTWVFEDAKHTNVENVLILSGDHLYRMDYMDLVQSHVDRNADITVSCAAEGDSRASDYGLVKVDGRGRIIQFSEKPKGADLKAMQADTSLLGLSPQEALRSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPASVREHNVQSYFFDDYWEDIGTIKSFYDANLALTEENPRFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECTVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIMNKDGVQEADRAEDGFYIRSGITIIMEKATIEDGTVI* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00548 615 SUPERFAMILY Trimeric LpxA-like enzymes 477 615 IPR011004 -
Rops3g00548 615 CDD LbH_G1P_AT_C 483 609 - -
Rops3g00548 615 SUPERFAMILY Nucleotide-diphospho-sugar transferases 181 576 IPR029044 -
Rops3g00548 615 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 133 615 IPR011831 GO:0005978|GO:0008878
Rops3g00548 615 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 394 404 IPR005836 GO:0005978|GO:0008878
Rops3g00548 615 Gene3D Hexapeptide repeat proteins 481 615 - -
Rops3g00548 615 FunFam Glucose-1-phosphate adenylyltransferase 481 615 - -
Rops3g00548 615 FunFam Glucose-1-phosphate adenylyltransferase 165 480 - -
Rops3g00548 615 Pfam Nucleotidyl transferase 185 461 IPR005835 GO:0009058
Rops3g00548 615 CDD ADP_Glucose_PP 186 446 - -
Rops3g00548 615 NCBIfam glucose-1-phosphate adenylyltransferase 183 579 IPR011831 GO:0005978|GO:0008878
Rops3g00548 615 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 279 287 IPR005836 GO:0005978|GO:0008878
Rops3g00548 615 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 169 480 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00548 Rops-Chr3 6835894 6844155 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00548 K00975 - gmx:100808791 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00548 3 6835894 6844155 Rops3g00548 3 6835894 6844155 ECH