LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g00528	ATGTCTGGCCCCCTTGACCGTTTTGCAAGACCATGTTTTGAGGGGTTCTCTGGTAGTGATGAGAAAAAGGAAAGAAGATCTGATTTTGAGAACTCTGAGGATGAGAGGAGGACTAGAATTGGATCTCTCAAGAAGAAAGCCCTCAATGCATCTTCCAAATTCAAGCATTCTTTAAAGAAAAAGAGCAGCAGGAGAAAAAGTGATGGCCGTGTTAGCTCAGTTTCCATTGAGGATGTTCGGGATGTTGAGGAGCTGCAGGCTGTTGATGCGTTTCGGCAATCATTGATTATGGATGAATTGCTTCCGGAGAAACATGATGATTACCATATGATGTTAAGATTTCTGAAAGCAAGGAAGTTTGATATGGAAAAAGCAAAGCATATGTGGGCTGATATGCTCCAATGGAGGAAGGAGTTTGGTGCTGACACTATCATGGAGGATTTCGAGTTCAAAGAAATAAACGAAGTTGTAAAGTATTATCCACATGGCCATCATGGTGTTGATAAGGAGGGAAGACCTGTTTATTTTGAAAGACTTGGAAAAGTGGATCCAAACAAACTTATGCAAGCTACCACTATGGATAGATATCTAAAGTACCATGTACAGGAATTTGAGAAAGCTTTTGCGATAAAGTTTCCTGCTTGCACAATTGCTGCCAAAAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGCGTGGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTATGCGATTACAAAAGATTGATGGTGACAATTACCCTGAGACTCTTTGCCAAATGTTTATCATAAATGCTGGCCCTGGGTTTAGGTTGCTGTGGAACACTGTCAAGTCTTTTCTTGATCCCAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAATAATAGATGCCAGTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGAGGTTGCCTCAGATCTGATAAAGGGCCCTGGAAAAACCCTGAAATATTAAAGATGATTCTCAGTGGTGAAGCAAGGCGGCCAAGGCAGGTAGTAAAAGTTCTAAATAGTGAAGGAAAGGTTATCGCATATGCTAAACCACGATGCCCAATGGTAAAAGGCAGTGATACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATAGCTTCTCCAAAAGCGGTGAAGAGTTACTCACACCTTAGGTTGACCCCTGTTCGTGAGGAAGCTAAGGTAGTTGGAAAGTCAAGCTATGCTGGTAGTGGTAACTTAGCTGGGTATGACGAATATGTTCCAATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAAGCAAGCATCACTCCAGAGGTCTCATACTGTAAAAGGAACCCCTCCCCTTCCTGACACTCCAAAAACTCCAGAAGGGATTCGAGTTCGGATTTGGCTAGCCTTGACTGCTTTCTTTTTGACCCTGTTTACTCTCTTCCGTTCAGTCGCATGTCGTATGACCAAGAAACTTCCTGAAGTATCATCTAATGATTGTCAGAGCACTTCCGAGCCAACTCTAGATACAATGAAAAATGAAGAACATTGTCCTCCTTCACCGACTCCGGCATATACAGAGGCAAATCTCCTTTCATCCATGATGAAAAGATTAGGTGAGCTTGAAGAGAAGGTTGGCATGCTCCAATCTAAGCCATCCGAGATGCCTTACGAGAAAGTGGAGTTGCTAAATGCTGCTGTCTACCGGGTGGATGCTTTGGAAGCAGAGCTGATTGCAACTAAAAAGGCTCTCTACGAAGCATTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATCATCAAGAAGAAGCTAAGTTACGGCAGAAGAAGAAATTCTGCTGGTGA	1890	0.4296	MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPEKHDDYHMMLRFLKARKFDMEKAKHMWADMLQWRKEFGADTIMEDFEFKEINEVVKYYPHGHHGVDKEGRPVYFERLGKVDPNKLMQATTMDRYLKYHVQEFEKAFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRPRQVVKVLNSEGKVIAYAKPRCPMVKGSDTSTAESGSEAEDIASPKAVKSYSHLRLTPVREEAKVVGKSSYAGSGNLAGYDEYVPMVDKAVDAGWKKQASLQRSHTVKGTPPLPDTPKTPEGIRVRIWLALTAFFLTLFTLFRSVACRMTKKLPEVSSNDCQSTSEPTLDTMKNEEHCPPSPTPAYTEANLLSSMMKRLGELEEKVGMLQSKPSEMPYEKVELLNAAVYRVDALEAELIATKKALYEALMRQEELLAYIDHQEEAKLRQKKKFCW*	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g00528	629	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	152	326	IPR001251	-
	Rops3g00528	629	SUPERFAMILY	CRAL/TRIO N-terminal domain	82	148	IPR036273	-
	Rops3g00528	629	MobiDBLite	consensus disorder prediction	1	73	-	-
	Rops3g00528	629	CDD	SEC14	150	321	IPR001251	-
	Rops3g00528	629	Gene3D	-	53	139	-	-
	Rops3g00528	629	SMART	CRAL_TRIO_N_2	107	132	IPR011074	-
	Rops3g00528	629	SMART	sec14_4	152	323	IPR001251	-
	Rops3g00528	629	PRINTS	Cellular retinaldehyde-binding protein signature	110	132	-	-
	Rops3g00528	629	PRINTS	Cellular retinaldehyde-binding protein signature	312	321	-	-
	Rops3g00528	629	PRINTS	Cellular retinaldehyde-binding protein signature	279	298	-	-
	Rops3g00528	629	FunFam	SEC14 cytosolic factor	140	352	-	-
	Rops3g00528	629	Pfam	CRAL/TRIO, N-terminal domain	103	131	IPR011074	-
	Rops3g00528	629	Gene3D	-	140	350	IPR036865	-
	Rops3g00528	629	Pfam	CRAL/TRIO domain	159	320	IPR001251	-
	Rops3g00528	629	MobiDBLite	consensus disorder prediction	511	531	-	-
	Rops3g00528	629	PANTHER	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	24	616	-	-
	Rops3g00528	629	MobiDBLite	consensus disorder prediction	16	42	-	-
	Rops3g00528	629	SUPERFAMILY	CRAL/TRIO domain	152	345	IPR036865	-
	Rops3g00528	629	MobiDBLite	consensus disorder prediction	49	66	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g00528	Rops-Chr3	6707039	6712634	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g00528	86	317	Acyl Lipid Metabolism Gene Families	AT5G47730	28.395	1.40e-19	89.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g00528	K26544		-	gmx:100785793	1091.64