Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00524 ATGCTTGTGCTGTTTGAAACACCTGCGGGTTTTGCACTTTTTAAAGTGCTGAATGAGGGCAAGCTTTCTAACGTTGAGGACTTATGGAAGGAGTTTTCCAGTGCAGATTCGGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTTGAGAATACTTCAGAAGCTCTAGAGGCAGCTACTTTGCTGATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTACGTGCTCATTGTGAAAATGAAACGTTGGGTGTTGCCGATTCAAAGCTTGGGAATATCATTAAGGAGAAATTGAAAATTGATTGTATTCACAACAATACCGTTATGGAGTTGATGAGAGGTGTTAGAAATCAGTTAACTGAACTGATCTCTGGTCTAGCTGTTCAAGACATGGCCCCAATGAGCTTGGGTTTATCTCATAGCTTATCCAGATACAAGTTGAAGTTTAGTGCAGAGAAGGTGGATACTATGATTGTCCAAGCAATTGGTTTACTTGATGATCTTGATAAAGAGTTGAATACATATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACCAAAATCATACAGGATAACATCCTTTATGCAAGGGCAGTCAAATTGATGGGCGATCGTGCTAATGCTGCAAAGCTTGATTTCTCTGAGATTTTGCCTGAGGAAGTTGAGGCGGAGCTGAAGGAAGCAGCTGTGATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGGCAAATATTAGAGAGCTTTGTGACCAGGTTTTGTCTCTTTCAGAATACAGAGCTCAACTCTATGATTATCTAAAGAGTAGGATGAACACCATTGCACCCAATTTGACTGCTATGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGGGGTAGCTTATTGAATCTTGCAAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTTAAGACTAAGCATGCGACTCCAAAGTATGGTCTTATATACCATGCATCCTTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAAATTTCTCGGTCACTTGCTGCGAAGACGGCATTGGCCATCAGGTGTGATGCACTTGGAGATAGCCAAGATAACACCATGGGATTGGAGAACAGAGCCAAGCTCGAAGCACGATTGAGGAACCTTGAAGGCAAAGAATTAGGTCGTTTTGCTGGTTCTGCTAAAGGGAAGCCCAAGATAGAAGTATATGACAAGGATCGGAAGAAGGGAGCTGGAGGACTGATAACTCCGGCTAAGACATATAATCCATCAGCTGATTCAGTTATTGGGAAAAAGTCTAATTCTGCAATGGATGAAGATACACATAAGAAGAAAGAAAAGAAGGAAAAGAAGAAAAAGGAGAAAAATGAAGAGGAGGATGCAGCTTTGCAAGCTGATCGAGATGGTGGTGAGGAACCAGAACATGAAGTTGTGAAAAAGGAAAAGAAGAAAAAAAGGAAGGAACCTACCGAGAATGCTGAGTTGCAGAATGGGGACAATAATTTGAGTGGAGAAAAGAAGAAAAAGAGGAAAAAGCACGCAGAGCAGGAAGAATTAGCTGAAATGCCAAGCAAAAAGAAAGGAAAAAAGAAGAAAAATGAGGACTAA 1650 0.423 MLVLFETPAGFALFKVLNEGKLSNVEDLWKEFSSADSARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRAHCENETLGVADSKLGNIIKEKLKIDCIHNNTVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYARAVKLMGDRANAAKLDFSEILPEEVEAELKEAAVISMGTEIGELDLANIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKTALAIRCDALGDSQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEVYDKDRKKGAGGLITPAKTYNPSADSVIGKKSNSAMDEDTHKKKEKKEKKKKEKNEEEDAALQADRDGGEEPEHEVVKKEKKKKRKEPTENAELQNGDNNLSGEKKKKRKKHAEQEELAEMPSKKKGKKKKNED* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00524 549 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Rops3g00524 549 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Rops3g00524 549 MobiDBLite consensus disorder prediction 447 507 - -
Rops3g00524 549 Gene3D - 129 284 - -
Rops3g00524 549 SUPERFAMILY Nop domain 153 397 IPR036070 -
Rops3g00524 549 Coils Coil 451 482 - -
Rops3g00524 549 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Rops3g00524 549 Gene3D Nop domain 285 397 IPR042239 -
Rops3g00524 549 MobiDBLite consensus disorder prediction 423 549 - -
Rops3g00524 549 MobiDBLite consensus disorder prediction 515 549 - -
Rops3g00524 549 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 546 IPR045056 GO:0030515|GO:0031428|GO:0032040
Rops3g00524 549 SMART NOSIC_2 159 211 IPR012976 -
Rops3g00524 549 FunFam Nucleolar protein 58 284 405 - -
Rops3g00524 549 FunFam Probable Nucleolar protein 58 129 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00524 Rops-Chr3 6630259 6634034 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00524 K14565 - gmx:100775301 894.419