Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00495 ATGGGAAGTTTGGGAGCGATTCTGAAACATCCAGATGACTTTTATCCATTGCTGAAACTGAAAATGGCAGTTAGGCACGCCGAGAAGCAGATCCCTCCGGAACCGCATTGGGCCTTCTGTTACACTATGCTTTTCAAGGTTTCTAGAAGTTTCGGACTCGTTATTCAGCAGCTTGGTCCTGAGCTTCGTAACGCTGTTTGCATATTTTATTTGGTTCTTCGAGCACTCGATACCGTTGAGGATGATACTAGCATAGCTACAGATGTCAAGGTGCCAATACTAATAGCTTTTTATCGTCACATCTATGATCGTGATTGGCACTTTTCATGTGGCACGAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACGGCTTTTCTGGAACTTGGAAAGAATTATCAGGAAGCAATTGAGGACATTACCAAAAGAATGGGTGCTGGGATGGCCAAATTTATCTGCAAGGAGGTAGAAACGGTTGATGACTACGATGAATATTGTCACTATGTGGCAGGACTTGTTGGACTGGGTCTATCAAAGCTTTTCCATGCCTCTGGTTCAGAAGATCTGGCTCCAGATTACCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAACATTATTCGAGATTATCTGGAAGACATCAACGAGATCCCCAAGTCGCGCATGTTTTGGCCACGGCAGATCTGGAGTAAATATGTTAACAAACTTGAGGACATGAAATATGAGGAGAACTCTGTTAAGGCGGTGCAATGCTTGAACGACATGGTCACTAATGCTCTGTTGCATGCTGAAGATTGCTTAAAATACATGTCTGCTTTACGAGACCTGGCTATATTTCGTTTTTGTGCCATTCCCCAGATAATGGCAATTGGAACACTTGCGTTATGTTACAACAACATCAAGGTCTTCAGAGGTGTGGTTAAAATGAGGCGAGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTTCTATGTTGGAGTCCAAGGTTGACAAAAACGATCCCAATGCAACAAAAACATTGAGCAGGTTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTGTCATAACTAAAAGGAAATCTTACATTCTGAGGAAGAACGGATATAGCTCAACCATGATTCTCATACTGGTCATCTTGGTTTCCATCATATTTGCTTATCTCTCTGCAAACCAGCATACTAACTAG 1239 0.4189 MGSLGAILKHPDDFYPLLKLKMAVRHAEKQIPPEPHWAFCYTMLFKVSRSFGLVIQQLGPELRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFYRHIYDRDWHFSCGTKEYKVLMDQFHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGLSKLFHASGSEDLAPDYLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDMKYEENSVKAVQCLNDMVTNALLHAEDCLKYMSALRDLAIFRFCAIPQIMAIGTLALCYNNIKVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASMLESKVDKNDPNATKTLSRLEAIQKTCRESGVITKRKSYILRKNGYSSTMILILVILVSIIFAYLSANQHTN* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00495 412 SFLD Isoprenoid Synthase Type I 36 325 - -
Rops3g00495 412 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Rops3g00495 412 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 403 IPR044844 GO:0004311
Rops3g00495 412 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Rops3g00495 412 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Rops3g00495 412 NCBIfam squalene synthase 36 367 IPR006449 GO:0004310|GO:0008610
Rops3g00495 412 FunFam Squalene synthase 1 34 370 - -
Rops3g00495 412 Gene3D Farnesyl Diphosphate Synthase 34 371 IPR008949 -
Rops3g00495 412 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Rops3g00495 412 Pfam Squalene/phytoene synthase 46 315 IPR002060 GO:0009058
Rops3g00495 412 SUPERFAMILY Terpenoid synthases 37 367 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00495 Rops-Chr3 6339317 6346167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00495 K00801 - gmx:547940 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00495 3 6339317 6346167 Rops3g00495 3 6339317 6346167 ECH