Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00486 ATGAAACTCTCCAAATTGTACCATGTTGCACTGTTTCATGTCTTGCTCATTGGATTGGGAAATGGTCATGATTACCATGAAGCATTATCAAAGGCCATTCTTTTCTTCGAGGGTCAGCGATCGGGTTTTCTCCCACAGCAGCAGAGAATGAATTGGCGTGGCAACTCTGGTCTTAGCGACGGTTGGAACTACAACACCGATCTCACCGGCGGTTACTATGATGCCGGAGACAACGTTAAATTCGGATTTCCGATGGCTTTCACGACAACAATGCTGGCGTGGAGCGTGTTGGAATTCGGGGACATGATGCCACCCGATGAAGTCACTAACACTTTCGTCGCTATTCGTTGGGCTACTGATTATTTGCTCAAAACTGTTTCTCAGCCTAATCGTATTTTCGTTCAGGTGGGTGATCCAAGTTCTGACCATGATTGTTGGGAGAGGCCAGAGGACATGGATACATCCAGGACTGTGTATGCTGTTGATGCACCAAACGCTGCTTCTGATGTGGCCGGTGAAACAGCTGCTGCACTAGCAGCCTCATCCATGGCATTCCGGTCATCAGACCCGGGTTATGCAGAGACTTTGCTTCAAAATGCTATTAATGCCTTTCAATTTGCAGATAAGTACAGGGGTGCTTACAGTGACAATAATAATGTTAAGTATGGTGCCTGCCCATATTATTGTGATTTTGATGGCTATCAGGACGAGTTGTTATGGGCAGCTGCATGGCTAAGGAGGGCCACACAATCTGATAATTTCCTTAACTACATTCAAAGCAATGGCCAAACACTAGGTGCTGATGACAACATCAATGAGTTTGGTTGGGACAACAAACATGCTGGCCTTAACGTTCTTGTTTCCAAGGAAGTCCTAGAAGAAAACATGTACTCTCTTGAGTCCTATAGGGCTTCAGCAGAGAGCTTTATGTGTACACTCATACCTGAATCACCAAGCTCACACATAGAATACACCCCTGGTGGACTAGTATACAGACCTGGTGGCAGCAACTTGCAGCATGCAACTTCAATTACTTTTCTTGAGTTGGTCTATGCCAATTACTTAACTCGCACGTCACAAGTCATCAATTGTGGGAACATCTATGTTAGTGCACAAACACTTCGCCAACATGCAAAGAGGCAAGTTGATTACATTTTAGGTGACAATCCAATGGGATTATCATACATGGTTGGATATAGTAACTACTATCCTCAACGTATTCATCATCGTGGTTCATCATTACCCTCCATCAAGGATCATCCTCAGTTCATTGCATGCAAAGAAGGTTCAATCTATTACAACTCAACTAATCCCAATCCTAATGTACTTGTTGGAGCCATTGTTGGAGGGCCAGATGAAAATGATTTTTATGTGGATGATCGAGTTGATTTTAGGAAATCCGAGCCAACCACATATATTAATGCACCATTTGTTGGAGTCTTAGCATATTTTGCTGCTAATCCCAATTTAAGTTAA 1476 0.435 MKLSKLYHVALFHVLLIGLGNGHDYHEALSKAILFFEGQRSGFLPQQQRMNWRGNSGLSDGWNYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDMMPPDEVTNTFVAIRWATDYLLKTVSQPNRIFVQVGDPSSDHDCWERPEDMDTSRTVYAVDAPNAASDVAGETAAALAASSMAFRSSDPGYAETLLQNAINAFQFADKYRGAYSDNNNVKYGACPYYCDFDGYQDELLWAAAWLRRATQSDNFLNYIQSNGQTLGADDNINEFGWDNKHAGLNVLVSKEVLEENMYSLESYRASAESFMCTLIPESPSSHIEYTPGGLVYRPGGSNLQHATSITFLELVYANYLTRTSQVINCGNIYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRGSSLPSIKDHPQFIACKEGSIYYNSTNPNPNVLVGAIVGGPDENDFYVDDRVDFRKSEPTTYINAPFVGVLAYFAANPNLS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00486 491 SUPERFAMILY Six-hairpin glycosidases 9 486 IPR008928 GO:0005975
Rops3g00486 491 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 457 475 IPR033126 -
Rops3g00486 491 FunFam Endoglucanase 21 489 - -
Rops3g00486 491 PANTHER ENDO-1,4-BETA-GLUCANASE 21 486 - -
Rops3g00486 491 Pfam Glycosyl hydrolase family 9 25 481 IPR001701 GO:0004553|GO:0005975
Rops3g00486 491 Gene3D - 22 487 IPR012341 GO:0005975
Rops3g00486 491 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 384 410 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00486 Rops-Chr3 6254465 6259005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00486 2 487 Glycoside Hydrolase AT1G70710 57.669 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00486 K01179 - gmx:100101849 913.679