Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00482 ATGGGAGCTATTGCTGGAGAAGAGCTGTTGAAATGGGAGAAGATGCAAGGAGTGAGTTGTGAAGAGAAGATTCTTGTGTTACTAAGGCTGAGGCCTTTGAATGAGAAGGAAATAGCTGCTAATGAATCAGCTGATTGGGAATGCATTAATGATACCACCATCTTGTACCGGAACACGCTGCGGGAGGGTTCCACATTTCCAAGCGCCTACACATTTGACAGAGTATTTCGGGGTGACTCTGCCACAAGGCAGGTATACGAGGAAGGAGTCAGAGAAATTGCTCTTTCAGTTGTTAGTGGAGTTAACTCAAGTATTTTTGCATACGGGCAAACAAGTAGTGGAAAGACATACACGATGATCGGAATAACCGAATACGCTGTAGCAGATATTTTTGACTATATAAAGAGGCATGAAGAAAGAGCATTCGTGTTGAAGTTCTCAGCCATTGAAATTTACAATGAAATTGTTAGAGACCTCCTCAGCACTGACAACACTCCACTTAGGCTGCGTGATGATCCTGAGAGAGGACCCATTTTAGAGAAACTTACTGAGGAGACTCTACGGGACTGGGGGCATATGAAAGAGCTCCTATCTTTTTGTGAAGCTCAGAGACAGGTAGGAGAGACATACCTGAATGAAAAGAGTTCTAGATCTCACCAAATTATCAGATTGACAATCGAAAGTTCTGCCAGGGAATTCCTGGGCAAAGGCAACAAAGCCACTCTAGCAGCTAGTGTGAATTTAGTTGATTTGGCAGGGAGTGAGCGTGCATCCCAGGCATCATCCGCTGGGATGAGATTGAAAGAAGGTTGTCACATAAACCGGAGTTTACTTACTCTTGGAACCGTCATTCGTAAGCTCAGTAAGGGAAGACATGGACACATCAATTACAGAGATTCCAAGTTGACACGCATACTGCAGCCTTGCTTAGGTGGCAATGCAAGAACAGCTATCATTTGTACTTTGAGCCCTGCACGAAGCCATGTTGAGCAAACTAGAAACACACTTCTTTTTGCTTGTTGTGCAAAAGAAGTGACCACTAAAGCACAGGTTAATGTAGTTATGTCTGATAAGGCCTTGGTGAAGCATTTGCAAAATGAGGTGGCCAGATTGGAGAGTGAGTTGAGAACTCCCGGTCCCGCTGCCTCCAATTGTGATTATGCAGCATTATTGAGGAAGAGAGATCTCCAGATAGAAAAGATGGAGAAGGAGATTAGGGAGCTAACTAAGCAACGTGATCTTGCTCACTCAAGGATTGAGGATTTGCTGCTCATGGTCGAAAAGGAGCAGATGTCTAGAAAAGAAAGGGAAGATACCTGGGAAGATGACCGTTCAGTGTCAGAGTCTTCGAGCATTTACGGTCCTCGTCATCCTGACACACACATTAGAGAGTTCAACAATCCTGACTATAATGATGGAGACAGTGGAGAAGATCCTGAGGAATACTGCAAAGAAGTTCGATGTGTTGAGTTGGAGGAGTCAAGTAAAGACAACTTAGAATATCTTGATCCATCGATAAGTGACAATGCTGAGTTGGCTTCGCCAATATCTGGAAGTGAAAATGGAACAAGCCAGGAAATATCTACACACTTGAATGAAGATAGGGAAGAGAGTCAGACCCAAGGAAACTCAACATATGGTGTACTTGAGCAGAGACCGCATGATGGACAATCAACCATTGATTCTCTTGTTGGTCCTTACCCTGATGAACTAGAAAATATGACAAACTATAGGAATGTTAAATTAACTAGAAGCCGGAGTTGTACGGAATATCACATGACCGGTTCTCCTGAGACAGTAGGAGAAATACAAAGGACTCCAGCCAATGGGTTTGAAAAAGGATTCCCTGGAAGACCAAATGGTTTGCAGCGAAAGTTCCCTCCAATAAATTATGATGGGTCGACAAGATTGTCAAGTAATGATTCTCAGTCTTCTATTGGAAGTCCTTCTGTGGATGAGCTTCGAGCCAGCAGTATGAGAACATCTGCTGATGAGGATATTACTAGCATCCAGACATTTGTTGCTGGGATGAAAGAAATGGTCAAACTTGAATATGAGAAGCAGCTTGTTGATGGTCAGGATAAGGAGACAGAAAGAAAACCATTTACGTTTGAGAGGAATGTGAAAGATGTAGGTGTGGATCCAATGTTGGAGGCACCTGGAACTCCTTTAGATTGGACTCTGCAATTCAAGAGGCAGCAAAAAGAGATAATTGAACTGTGGCAATCTTGCTGTGTACCATTGACCCACAGGACCTACTTCTTTCTTTTGTTCAGGGGTGATCTAACAGACTCCATTTACATGGAGGTAGAGCTTAGAAGACTATGTTTCCTAAAAGAAACATTTTCTGATGGAAACCAGTCTGAGAAAGACGGTCAGACATTCACACTGGCTTCAAGTGTGAAAGCTCTTCGCCGAGAGCGAGAAATGCTTGTCAAACTTATGCAGAAGAGGTTTTCCGAGGAAGAGAGAAAAAGGCTATTCAAGGAGTGGGACATTGCATTGGATTCAAAGCGCAGGAGGATGCAGCTAGCGTACCGTTTATGGAGCAGCACTGATATGAACCACGTAATGCAGAGTGCCACAATAGTTGCAAAGTTAGTAAGGTTTTCGGAGCAGGGCAAGGCCCTCAAGGAGATGTTTGGGCTTAGCTTCACACCCCAACTCTCACGGCGGAGATCTTACTATTGGAAAAATGGCAGAGCATCTCTTCCATAG 2718 0.4375 MGAIAGEELLKWEKMQGVSCEEKILVLLRLRPLNEKEIAANESADWECINDTTILYRNTLREGSTFPSAYTFDRVFRGDSATRQVYEEGVREIALSVVSGVNSSIFAYGQTSSGKTYTMIGITEYAVADIFDYIKRHEERAFVLKFSAIEIYNEIVRDLLSTDNTPLRLRDDPERGPILEKLTEETLRDWGHMKELLSFCEAQRQVGETYLNEKSSRSHQIIRLTIESSAREFLGKGNKATLAASVNLVDLAGSERASQASSAGMRLKEGCHINRSLLTLGTVIRKLSKGRHGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQNEVARLESELRTPGPAASNCDYAALLRKRDLQIEKMEKEIRELTKQRDLAHSRIEDLLLMVEKEQMSRKEREDTWEDDRSVSESSSIYGPRHPDTHIREFNNPDYNDGDSGEDPEEYCKEVRCVELEESSKDNLEYLDPSISDNAELASPISGSENGTSQEISTHLNEDREESQTQGNSTYGVLEQRPHDGQSTIDSLVGPYPDELENMTNYRNVKLTRSRSCTEYHMTGSPETVGEIQRTPANGFEKGFPGRPNGLQRKFPPINYDGSTRLSSNDSQSSIGSPSVDELRASSMRTSADEDITSIQTFVAGMKEMVKLEYEKQLVDGQDKETERKPFTFERNVKDVGVDPMLEAPGTPLDWTLQFKRQQKEIIELWQSCCVPLTHRTYFFLLFRGDLTDSIYMEVELRRLCFLKETFSDGNQSEKDGQTFTLASSVKALRREREMLVKLMQKRFSEEERKRLFKEWDIALDSKRRRMQLAYRLWSSTDMNHVMQSATIVAKLVRFSEQGKALKEMFGLSFTPQLSRRRSYYWKNGRASLP* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00482 905 PRINTS Kinesin heavy chain signature 295 316 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops3g00482 905 PRINTS Kinesin heavy chain signature 100 121 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops3g00482 905 PRINTS Kinesin heavy chain signature 245 263 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops3g00482 905 PRINTS Kinesin heavy chain signature 209 226 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops3g00482 905 MobiDBLite consensus disorder prediction 538 558 - -
Rops3g00482 905 ProSitePatterns Kinesin motor domain signature. 244 255 IPR019821 GO:0003777|GO:0005524|GO:0007018
Rops3g00482 905 MobiDBLite consensus disorder prediction 509 571 - -
Rops3g00482 905 MobiDBLite consensus disorder prediction 430 445 - -
Rops3g00482 905 CDD KISc_CENP_E 23 345 - -
Rops3g00482 905 Coils Coil 354 374 - -
Rops3g00482 905 MobiDBLite consensus disorder prediction 510 528 - -
Rops3g00482 905 Gene3D Kinesin motor domain 15 376 IPR036961 -
Rops3g00482 905 MobiDBLite consensus disorder prediction 430 482 - -
Rops3g00482 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 377 IPR027417 -
Rops3g00482 905 ProSiteProfiles Kinesin motor domain profile. 23 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops3g00482 905 PANTHER CENTROMERE PROTEIN E 21 892 IPR027640 GO:0003777|GO:0007018
Rops3g00482 905 SMART kinesin_4 21 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops3g00482 905 MobiDBLite consensus disorder prediction 632 662 - -
Rops3g00482 905 FunFam Kinesin-like protein 17 376 - -
Rops3g00482 905 Coils Coil 391 418 - -
Rops3g00482 905 MobiDBLite consensus disorder prediction 609 662 - -
Rops3g00482 905 Pfam Kinesin motor domain 29 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops3g00482 905 Pfam Domain of unknown function (DUF3490) 729 888 IPR021881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00482 Rops-Chr3 6218402 6227652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00482 18 375 Miscellaneous Gene Families AT5G06670 42.623 1.29e-80 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00482 K11498 - gmx:100820012 1454.11