Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00480 ATGGCTGAAGTCGAAGAAGCAGCATCTCAAAAATCTCTTCAGGATTTCGATCCTCAAAAGAAGCCCAAAAGGAACAAGTTTGCTTTGGCTTGTGCTATTTTAGCTTCCATGACTTCCATCCTACTTGGTTACGATATTGGTGTGATGAGTGGAGCAGTTATCTATATAAAGAGAGACCTCAAAATCTCCGACGTGCAAATTGAAATCCTCTCTGGTATCATAAACCTTTACTCTCCCATAGGTTCTTACATCGCCGGCAGAACCTCCGACTGGATTGGTCGCCGTTACACCATGGTCCTCGCCGGTGCAATTTTCTTTGCCGGAGCCATTCTAATGGGATTTTCTCCCAACTATGCATTTCTCATGTTTGGCCGTTTCTTCGCCGGCGTTGGAATCGGTTTCGCCTTCCTCATTGCTCCTGTCTACACTTCCGAAGTCTCCCCTACTGCCTCCCGTGGCTTCCTCACTTCCTTGCCTGAGGTTTTTCTGAATGGAGGGATTTTAATTGGATACATATCAAACTATGCGTTTTCTAAACTACCACTTCGGTTAGGTTGGAGACTCATGCTTGGAGTTGGAGCCATTCCTTCAATATTCTTAGCCGTGGCGGTGTTAACTATGCCTGAGTCACCAAGGTGGCTTGTTGCAAAGGGTCGTTTAGGTGAAGCCAAAAAAGTTCTCAACAAAATCTCAGATTCCAAAGAAGAGGCTCAGCTAAGACTAGCCGATATTAAAGAAACAGCTGGAATCCCCCAAGATTGCAACGACGACGTCGTTCAAGTAACAAAGAATATTCAAGGCAAGGGTGTATGGAAAGAGCTGTTCCTTTATCCTACACCCGCAGTTCGTCACATTTTCATTGCATCCCTTGGGATTCATTTCTTCGCACAAGCAACTGGCATAGACGCAGTCGTTTTGTATAGCCCAAGAGTCTTCGAGAAAGCTGGGATCAAATCCGATGATTATAAGCTTCTCGCAACCGTAGCCGTTGGATTCGTTAAGACCTTCTGTGTCTTGGTGTGTACGTTTTTATTGGATCGGGCCGGTCGACGTGTGTTGTTGTTGAGCAGTGTTACCGGTTTGATAATCTCGCTTCTAACCCTTGGGATAAGTCTCACTATTAGTGATCATTCACATACTACGCTGAATTGGGCCATTGGGCTTAGCATAGCTGGGGCTTTAGCCTTTGTGGGCACGTTCTCTATTGGGTCAGGGCCCATCACGTGGGTTTATAGTTCTGAGATATTTCCGTTAAGGCTTCGCGCTCAGGGTGTGGCCATTGGAGCTGTGGTTAATAGGGTTACCAGTGGGGTTATCTCGATGACCTTTTTGTCCCTCACTAAAGCCATTACCATTGGGGGTGCTTTCTTTCTCTTCGCGGGGGTTGCTGTTGCCGCGTGGATCTTTCACTATAATTTGCTCCCTGAAACACGGGGGAAAACTCTTGAGGAAATTGAAGGGTCTTTTGGTAATTTCTGCAGGAAACCCCATGCCCCCCGGGTAAGTAACGGTAACGGCCAAATCGAATTGAGAACCACTGGCCAGACTTTGACAACTAAGGATTAG 1566 0.4649 MAEVEEAASQKSLQDFDPQKKPKRNKFALACAILASMTSILLGYDIGVMSGAVIYIKRDLKISDVQIEILSGIINLYSPIGSYIAGRTSDWIGRRYTMVLAGAIFFAGAILMGFSPNYAFLMFGRFFAGVGIGFAFLIAPVYTSEVSPTASRGFLTSLPEVFLNGGILIGYISNYAFSKLPLRLGWRLMLGVGAIPSIFLAVAVLTMPESPRWLVAKGRLGEAKKVLNKISDSKEEAQLRLADIKETAGIPQDCNDDVVQVTKNIQGKGVWKELFLYPTPAVRHIFIASLGIHFFAQATGIDAVVLYSPRVFEKAGIKSDDYKLLATVAVGFVKTFCVLVCTFLLDRAGRRVLLLSSVTGLIISLLTLGISLTISDHSHTTLNWAIGLSIAGALAFVGTFSIGSGPITWVYSSEIFPLRLRAQGVAIGAVVNRVTSGVISMTFLSLTKAITIGGAFFLFAGVAVAAWIFHYNLLPETRGKTLEEIEGSFGNFCRKPHAPRVSNGNGQIELRTTGQTLTTKD* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00480 521 ProSitePatterns Sugar transport proteins signature 2. 127 152 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 SUPERFAMILY MFS general substrate transporter 17 486 IPR036259 -
Rops3g00480 521 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g00480 521 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 25 489 IPR045262 GO:0015144
Rops3g00480 521 Gene3D MFS general substrate transporter like domains 21 491 IPR036259 -
Rops3g00480 521 Coils Coil 227 247 - -
Rops3g00480 521 ProSitePatterns Sugar transport proteins signature 1. 85 102 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 Pfam Sugar (and other) transporter 31 487 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 CDD MFS_PLT 34 485 IPR044776 GO:0005351
Rops3g00480 521 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 478 IPR020846 GO:0022857
Rops3g00480 521 NCBIfam sugar porter family MFS transporter 18 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 PRINTS Sugar transporter signature 122 141 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops3g00480 521 FunFam probable polyol transporter 4 21 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00480 Rops-Chr3 6120463 6122436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00480 18 515 Organic Solute Cotransporters AT3G18830 65.941 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00480 - - gmx:100816478 816.609