Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00458 ATGGAAGTTAACCTCTGTTTGAACCACCACCATCACGCCCTCAGATTAACAACCTCTTCCACTCCACGAACACACTTCCTCGGTTGCGTCCACAGTCTCAGGCCTCCACCACCACCACTACCTGCGTCTGGACGATACCTTCGCTCTCGAAACAAACGCAACAAGTTAGGGCTTCTTCAATTCCATTCCCCGCGCTTCGTCTTCAATGCTTCCTTCCGATCTCATTCCGTTATCGTCGTTGTCATCGTTGTTACTTTATCTGCCGTTTCTTTCCTCCATTTCACTCTCAACAAGAAAAAGAAGACTCTCAACCAGACTCGGGGACATGCAAAATTTGCATTATCACCACAAGGAGGTAATGTTGGGAACCAGGTCATTGGTAGCCAGATTCTTGGTTTTCCTGAACTTCAAAGGGATAACCCGCTGAACGAAATTGGGAAGTTAAAAGATCATAATGGAGAAGACAACCGGGTTTTTGAGGACAAAGAGGTCCACCTTCCATTTTTGGAATCTACTATGGTGCATGAAACGGCCATCACGACTAAGACATCAGAGTCAACTTCCTCTGGTGTTGACTCTAGCGTCAACAATGATAACAGTTCCAAGGTATTAGAGGAGCCTTTTTTATCTGTGGCTTTGCAATCAAGTTTATCACAACCTCTAGCTTTTGCCGAGGAAATGACTTTACAAATAGAAGAAAATCAAGATAAAGTTGACCCTGAGTTGCCTTTTGATGTGGTCAAATCTAAGAATACTGCTTCTCCGGTTCCTGTAAACAATGCACTCGCAACAATCAATGAACATACTGAAGAAAAAATTGAACTGGGTGCCATCAGCAGTGACGTCCTTTTTGGTGAATCAGAAAGGGAAGGGCTGTACATGTTTTATGAGGGTAACAAGTCTGTAACCAGCTCCATGATACCACTAAATAGTTTAAAGTCATCATCTCGTCGTGCTTCTTTTATGAATAGAAAAGGATTGCCATCAGCAATAGGAAACACCACGCTAACAGGATCAGGATTATCTACAGACATTTCTCTACATGGAACAGAGTATGTTGAAGGAGCAGTTAAGTTTTCCAGTCATAAAGAAGGCTACCGTCCTCAACATACAAGTAAAAACTCGAGGAAAGGCAGCAGAGCTCTGAGAGACAGGGAAAAGAACCATATGGATCACAATAGTAACGAAGTTTTGCCACAGAATGCCCACACAATCAGGGTGAACGTTGATAAGAAAAATAATCAAATCAGGGTTCATGATGATCAGGAAATTGATCCTTCAGAGCATCTAAGTAAATATAATAATTTGCTAAAAGCTGGGAGGTTACATGAATGTGTAGAATTGCTTAAAGATATGGAAACGAAGGGTTTGTTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACGAAAAGCTGTTAAAGAAGCTTTTGATTACATTCAGCTTATTCCAAATCCAACACTGAGCACATTTAATATGCTAATGTCGGTGTGTACAAGCTCCCAAGATTCAGAAGGGGCTTTCCAAGTTATGCAGCTTCTTAAGGATGCTAGACTAGAACCAGATTGCAAACTTTATACCACTCTGATATCGACTTGTGCCAAGAGTGGGAAAGTTGATCTCATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAATGTTCTGACATATGGGGCACTTATTGATGGATGTGCTAGAGCTGGGCAAGTAGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAACGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCGCAGTCGGGAGCAGTGGATCGTGCTTTTGATGTGGTAGCAGAAATGGCAGCTGAAACACAGCCCCTCGACCCAGATCACATAACTTTTGGTGCATTAATGAAGGCATGTGCAAATGCTGGTCAGGTTGAACGAGCACGAGAAGTGTATAAGATGATGCAACAATATAACATCAAGGGATCTCCAGAAGTTTACACTATTGCTATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCACGTAGTGTATACAATGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGCTTCTGAGTGCACTTATAGATGTTGCCGGACATGCTAGAAATCTGGATGCTGCCTTTGACATACTACAAGAAGCCCGTAAAGGAGGAATGCGTATTGGAATAATGACATATAGCTCGTTGATGGGTGCCTGTAGCAAAGCAAGAAATTGGCAGAAGGCATTGGAGCTATATGAATATCTTAAATCTCATAAATTGGTACAAACTGTTTCAACAGTTAATGCTTTGCTCACTGCACTTTGTGATGGGGATCAATTTCAGAAGGCTTTGGAGGTTTTATCTGAAATGAAAGGATTGGGATTGTGCCCAAACAGTATCACATTCTCAATACTTATAGTGGCAAGTGAGAAAAAGGATAATATAGAAGCAGCTCAAACACTCCTTTCTCAAGCCAAAAAGGATGGTGCAGCCCCTAATCTCATCATGTGTAGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAGGGCTTGCTTTGTTGGCGAACCTGTTTTATCTCTTGACTCAGTACGGCCACAAATTAATAATAAATGGACATCACTGGCTTTAATGGTGTATCGTGAAACAATTGGAGCTGGGGAAAAGCCTACAAATGAAATATTGTCACTAATTCTGGGGTGCCTGCAACTCCCTCATGATACATCTGTGAAAAATAGACTTGTTGAGAACCTGGGAGTAAGTGCTGAAACTTCAAGAAGCTCAAACCTCTATTCATTGATGGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCAATACTTGAGGAAGCTGCTTCACATGGAGTTGTTCCATCTGTATCATTTAAAGTGAGTCCTATTGTTATCGATGCTAAAGAATTGCATGCTTTTACTGCTGAGGTATACCTATTAACTGTTTTAAAAGGCCTCAAGCATCGATTAGCAGCAGGTGCACAATTACCCAATATAACAATTTTATTGCCCGTAGAAAAAACAAAAATTTCGTCTCCTAAGGGGGAGCAGATTATTAATCTTGCAGGAAGAGTTGGCCAAGCAGTTGCAGCGTTATTGAGGAGGCTTCAGATTCCTTACCACGGTAATGAATCGTATGGGAAGCTTAGAATTAATGGTCTAGCTCTGAAAATCTGGTTTCAGCCGAAACTTGCATCTCCATTCAGCGGAAAACCAGGTGACTGGAGCTCATCCCAATCACGACTGGGCAAAAGTATTAGCCATCAGCAGCGGAACATTAGAACTGGCAATCTATCTTTGGACTAA 3351 0.4169 MEVNLCLNHHHHALRLTTSSTPRTHFLGCVHSLRPPPPPLPASGRYLRSRNKRNKLGLLQFHSPRFVFNASFRSHSVIVVVIVVTLSAVSFLHFTLNKKKKTLNQTRGHAKFALSPQGGNVGNQVIGSQILGFPELQRDNPLNEIGKLKDHNGEDNRVFEDKEVHLPFLESTMVHETAITTKTSESTSSGVDSSVNNDNSSKVLEEPFLSVALQSSLSQPLAFAEEMTLQIEENQDKVDPELPFDVVKSKNTASPVPVNNALATINEHTEEKIELGAISSDVLFGESEREGLYMFYEGNKSVTSSMIPLNSLKSSSRRASFMNRKGLPSAIGNTTLTGSGLSTDISLHGTEYVEGAVKFSSHKEGYRPQHTSKNSRKGSRALRDREKNHMDHNSNEVLPQNAHTIRVNVDKKNNQIRVHDDQEIDPSEHLSKYNNLLKAGRLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDYIQLIPNPTLSTFNMLMSVCTSSQDSEGAFQVMQLLKDARLEPDCKLYTTLISTCAKSGKVDLMFEVFHKMVNSGVEPNVLTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVVAEMAAETQPLDPDHITFGALMKACANAGQVERAREVYKMMQQYNIKGSPEVYTIAINSCSQTGDWEFARSVYNDMTQKGVLPDEMLLSALIDVAGHARNLDAAFDILQEARKGGMRIGIMTYSSLMGACSKARNWQKALELYEYLKSHKLVQTVSTVNALLTALCDGDQFQKALEVLSEMKGLGLCPNSITFSILIVASEKKDNIEAAQTLLSQAKKDGAAPNLIMCRCIIGMCLRRFERACFVGEPVLSLDSVRPQINNKWTSLALMVYRETIGAGEKPTNEILSLILGCLQLPHDTSVKNRLVENLGVSAETSRSSNLYSLMDGFGEYDPRAFSILEEAASHGVVPSVSFKVSPIVIDAKELHAFTAEVYLLTVLKGLKHRLAAGAQLPNITILLPVEKTKISSPKGEQIINLAGRVGQAVAALLRRLQIPYHGNESYGKLRINGLALKIWFQPKLASPFSGKPGDWSSSQSRLGKSISHQQRNIRTGNLSLD* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00458 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 774 808 IPR002885 -
Rops3g00458 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Rops3g00458 1116 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 441 572 - -
Rops3g00458 1116 Gene3D Tetratricopeptide repeat domain 577 739 IPR011990 GO:0005515
Rops3g00458 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Rops3g00458 1116 Gene3D Tetratricopeptide repeat domain 457 576 IPR011990 GO:0005515
Rops3g00458 1116 Gene3D Tetratricopeptide repeat domain 747 862 IPR011990 GO:0005515
Rops3g00458 1116 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 19 1115 - -
Rops3g00458 1116 MobiDBLite consensus disorder prediction 1086 1116 - -
Rops3g00458 1116 MobiDBLite consensus disorder prediction 360 381 - -
Rops3g00458 1116 Pfam Pentacotripeptide-repeat region of PRORP 494 625 IPR033443 -
Rops3g00458 1116 Pfam Pentacotripeptide-repeat region of PRORP 642 784 IPR033443 -
Rops3g00458 1116 Pfam PPR repeat 436 457 IPR002885 -
Rops3g00458 1116 Coils Coil 819 839 - -
Rops3g00458 1116 NCBIfam pentatricopeptide repeat 530 563 IPR002885 -
Rops3g00458 1116 NCBIfam pentatricopeptide repeat 565 597 IPR002885 -
Rops3g00458 1116 NCBIfam pentatricopeptide repeat 636 667 IPR002885 -
Rops3g00458 1116 NCBIfam pentatricopeptide repeat 672 705 IPR002885 -
Rops3g00458 1116 NCBIfam pentatricopeptide repeat 777 809 IPR002885 -
Rops3g00458 1116 NCBIfam pentatricopeptide repeat 742 772 IPR002885 -
Rops3g00458 1116 NCBIfam pentatricopeptide repeat 495 528 IPR002885 -
Rops3g00458 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Rops3g00458 1116 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 719 866 - -
Rops3g00458 1116 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 627 718 - -
Rops3g00458 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Rops3g00458 1116 MobiDBLite consensus disorder prediction 1085 1116 - -
Rops3g00458 1116 Pfam Pentatricopeptide repeat domain 797 855 IPR002885 -
Rops3g00458 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Rops3g00458 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00458 416 844 Glycosyltransferase AT1G05670 25.576 5.76e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00458 - - gmx:100814164 1655.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00458 3 5704481 5716756 Rops3g00458 3 5704481 5716756 ECH