Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00454 ATGGGTGCACTGGATCACATCTCAGAGCTCTTTGACTGCTCCTATAGCAGTTCCAAGTTCAAGAAGAGGCGCAAGGCATTCACGACTGTGGAGGTGAAAGTGAAGATGGACTGTGAAGGATGTGAGAGGAAAGTGAAGAAATCGGTTCAAGGGATGAAAGGGGTGACCCAAGTGGAGGTAGAACGAAGGGCTAGTAAGGTAACTGTTCAAGGGTATGTGGAACCTTCTAAGGTGGTGGCACGCATCGCTCACCGCACGGGGAAAAGGGCTGAGTTATGGCCTTACGTGCCATACGACGTCGTTGCACACCCTTATGCTCCTGGTGTGTATGACAGGAAAGCACCCACTGGTTATGTTCGAAACGCTGATAACCCTAACGTTTCTTACCTTGCACGTGCCAGCTCCACCGAGGTTAGATACACCACCGCTTTTAGCGACGAAAACCCCGCCGCATGTTCCGTAATGTGA 468 0.5107 MGALDHISELFDCSYSSSKFKKRRKAFTTVEVKVKMDCEGCERKVKKSVQGMKGVTQVEVERRASKVTVQGYVEPSKVVARIAHRTGKRAELWPYVPYDVVAHPYAPGVYDRKAPTGYVRNADNPNVSYLARASSTEVRYTTAFSDENPAACSVM* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00454 155 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 29 152 IPR045181 GO:0046872
Rops3g00454 155 Pfam Heavy-metal-associated domain 32 87 IPR006121 GO:0046872
Rops3g00454 155 FunFam Heavy metal-associated isoprenylated plant protein 26 14 93 - -
Rops3g00454 155 SUPERFAMILY HMA, heavy metal-associated domain 27 94 IPR036163 GO:0046872
Rops3g00454 155 CDD HMA 31 91 IPR006121 GO:0046872
Rops3g00454 155 Gene3D - 13 94 - -
Rops3g00454 155 ProSiteProfiles Heavy-metal-associated domain profile. 27 91 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00454 Rops-Chr3 5625691 5626389 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00454 - - gmx:547973 269.24