Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00453 ATGGCGGAAGAAGATTACAAGGAGGAGCAGGAGGTGGAGGTTGAAGAAGAGTTCTCTGTTTGGAAGAAGAACACTCCTTTGTTATACGACTTTTTCATCTCTCACCCTCTTCAATGGCCTTCTCTCACTGTTCACTGGCTTCCTTCTTCTCCTCAACCCCATTCCCACCCTTCCTTCAACCTCCACAAGCTCCTCTTAGCCACTCACACCTCCCAAGATGAACCCAACTTTCTTATGCTCGCCAACGCCTCCCTTCCGATAAACACATCGCAACCCATAATCGCTGACGATCCTCAAAATCCCGTTCTTCCAAAGGTAGAGATTTCCCAGAGGATTCTGGTTGATGGGGAGGTGAATCGAGCACGTTGTATGCCACAGAATCCCAATGTTGTTGCCACCAAGACTTGTAATTCTGAGGTTTATGTGTTTGATTTTACCAAGGAAAGAGGGTCTGGTTGTGATCCTGATTTTAGGTTGAGGGGTCATGATAAAGAAGGTTATGGCTTGTCTTGGAGCCCTTTTAAGACTGGATACCTTTTAAGCGGTTCACATGATCGTAAGGTTTGCTTGTGGGATGTAATGGCTGCTTCTCAAGGGAGAGTGCTTGATGCGGTTCAGGTTTATGAGGGCCATGAAAGTGTGGTTGAAGATGTGTCCTGGAATTTAAAGGATGAGAATTTATTTGGGTCTGTTGGAGATGACTGCAACTTGATACTCTGGGACTTGCGGACTAACAAAGCTCAACAATCAGTCAAACCACATGAGAGGGAGGTGAACTTTCTTTCTTTCAGTCCGTATAATGAATGGATTTTGGCTACAGCATCATCTGACACCACCGTTGGTCTCTTTGATACACGGAAGCTGACGGTGCCACTGCATGTTTTAAGTAGCCGCACGGATGAGGTATTCCAGGTAGAGTGGGATCCTAATCACGAGACCGTGTTGGCATCTTCTGGTGCTGACAGAAGGCTGATGGTTTGGGACCTTAACAGGGTTGGGGATGAGCAGATAGAGGGAGATGGCGAAGGTGGTCCTCCTGAACTACTCTTCTCTCATGGAGGTCACAAAGGGAAAATATCGGATTTTTCATGGAACCAAAATCAGCCATGGGTCATCTCAAGTGTAGCGGAGGACAATTCCTTCCATGTTTGGCAAATGGCCGAGAGCATTTACAATGACGGTGACGACGATGACATGTGGATGGCTAATGACCAACACTAA 1221 0.4668 MAEEDYKEEQEVEVEEEFSVWKKNTPLLYDFFISHPLQWPSLTVHWLPSSPQPHSHPSFNLHKLLLATHTSQDEPNFLMLANASLPINTSQPIIADDPQNPVLPKVEISQRILVDGEVNRARCMPQNPNVVATKTCNSEVYVFDFTKERGSGCDPDFRLRGHDKEGYGLSWSPFKTGYLLSGSHDRKVCLWDVMAASQGRVLDAVQVYEGHESVVEDVSWNLKDENLFGSVGDDCNLILWDLRTNKAQQSVKPHEREVNFLSFSPYNEWILATASSDTTVGLFDTRKLTVPLHVLSSRTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNQNQPWVISSVAEDNSFHVWQMAESIYNDGDDDDMWMANDQH* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00453 406 ProSitePatterns Trp-Asp (WD) repeats signature. 315 329 IPR019775 -
Rops3g00453 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 330 - -
Rops3g00453 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 330 IPR001680 GO:0005515
Rops3g00453 406 SUPERFAMILY WD40 repeat-like 114 386 IPR036322 GO:0005515
Rops3g00453 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 250 IPR001680 GO:0005515
Rops3g00453 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 201 IPR001680 GO:0005515
Rops3g00453 406 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 16 86 IPR022052 -
Rops3g00453 406 ProSitePatterns Trp-Asp (WD) repeats signature. 179 193 IPR019775 -
Rops3g00453 406 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Rops3g00453 406 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Rops3g00453 406 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Rops3g00453 406 FunFam WD-40 repeat-containing protein MSI1 1 404 - -
Rops3g00453 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 193 - -
Rops3g00453 406 Gene3D - 1 402 IPR015943 GO:0005515
Rops3g00453 406 SMART WD40_4 201 241 IPR001680 GO:0005515
Rops3g00453 406 SMART WD40_4 288 328 IPR001680 GO:0005515
Rops3g00453 406 SMART WD40_4 244 284 IPR001680 GO:0005515
Rops3g00453 406 SMART WD40_4 152 192 IPR001680 GO:0005515
Rops3g00453 406 SMART WD40_4 105 144 IPR001680 GO:0005515
Rops3g00453 406 SMART WD40_4 345 385 IPR001680 GO:0005515
Rops3g00453 406 Pfam WD domain, G-beta repeat 205 241 IPR001680 GO:0005515
Rops3g00453 406 Pfam WD domain, G-beta repeat 349 384 IPR001680 GO:0005515
Rops3g00453 406 Pfam WD domain, G-beta repeat 248 284 IPR001680 GO:0005515
Rops3g00453 406 Pfam WD domain, G-beta repeat 291 328 IPR001680 GO:0005515
Rops3g00453 406 Pfam WD domain, G-beta repeat 159 192 IPR001680 GO:0005515
Rops3g00453 406 PANTHER WD40 REPEAT FAMILY 8 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00453 Rops-Chr3 5613267 5619841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00453 205 387 Miscellaneous Gene Families AT5G08390 20.765 4.45e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00453 K10752 - gmx:100791834 713.375