LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g00450	ATGGCTTCCAAGAGAATACTGAAGGAGCTCAAGGACTTGCAGAGAGACCCACCAACTTCATGCAGTGCAGGCCCTGTGGGTGAGGACATGTTCCATTGGCAAGCAACCATCATGGGTCCAAATGACAGTCCCTATGCTGGTGGTGTTTTCCTTGTCACCATTCATTTCCCTCCTGATTACCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATTAACAGCAATGGCAATATTTGCCTTGACATACTCAAAGAACAATGGAGTCCTGCTCTCACCATATCCAAGGTGCTGCTCTCTATATGTTCTCTGCTAACGGATCCAAATCCTGATGACCCTCTTGTGCCTGAAATTGCTCATATGTGTAAGACAGACAAAGTCAAGTATGAGTCCACTGCTAGAAGCTGGACCCAGAAGTATGCCATGAGCTAA	447	0.4698	MASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIMGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKVKYESTARSWTQKYAMS*	149

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g00450	148	ProSitePatterns	Ubiquitin-conjugating (UBC) active site signature.	74	89	IPR023313	-
	Rops3g00450	148	PANTHER	UBIQUITIN-CONJUGATING ENZYME E2	29	135	-	-
	Rops3g00450	148	SMART	ubc_7	4	147	-	-
	Rops3g00450	148	FunFam	Ubiquitin-conjugating enzyme 28, E2	1	148	-	-
	Rops3g00450	148	SUPERFAMILY	UBC-like	2	147	IPR016135	-
	Rops3g00450	148	Gene3D	Ubiquitin Conjugating Enzyme	1	148	IPR016135	-
	Rops3g00450	148	Pfam	Ubiquitin-conjugating enzyme	5	141	IPR000608	-
	Rops3g00450	148	CDD	UBCc	3	142	IPR000608	-
	Rops3g00450	148	ProSiteProfiles	Ubiquitin-conjugating (UBC) core domain profile.	1	147	IPR000608	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g00450	Rops-Chr3	5581969	5583284	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g00450	2	114	Miscellaneous Gene Families	AT3G17000	36.975	7.74e-21	84.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g00450	K06689		-	gmx:100787053	311.227

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops3g00450	3	5581969	5583284	Rops3g00450	3	5581969	5583284	ECH