Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00448 ATGTCAACTCTCAAACTTCTTTTCATTACCATTGTTTCTTTGGCCATTATTGCAAGCGCTGATGATGATCAGAACAAGAAGACTGTCACTTATGATGGAAGGTCAATCATTATCAATGGAAATCGGGAGCTTCTCTTCTCCGGTTCCATCCATTACCCACGAAGCACCCCAGAAATGTGGCCAGATCTTCTTGATAAGGCAAAACATGGAGGTTTGAACGTGATTCAAACTTACGTGTTTTGGAACATTCATGAGCCTGGGAAAGGCAACTTAAAATTCGACGGTAATTATGATTTGGTGAAGTTCATTAAGCTCGTACAAGAGAAAGGAATGTATGTAACCCTCAGGGTTGGGCCTTTCATCCAAGCTGAATGGAATCACGGAGGACTTCCATATTGGCTAAGAGAGGTTCCTGACATCATATTCCGCTCTAACAATGACCCCTTTAAGAAGCACATGAAAGAATTTGTATCAACTGTGATAGCAAAGATGAAAGAAGAGAAGCTCTTTGCTCCACAAGGAGGCCCCATCATCTTGTCACAGATTGAGAATGAGTACAACCATATTCAACTTGCTTATGAAGAGGACGGAGTTAGTTATGTAAATTGGGCCGCAAAAATGGCAGTGGCACTGGATACTGGAGTTCCATGGATCATGTGCAAGCAGAAGGATGCTCCAGATCCAGTGATTAATGCATGCAATGGAAGGCACTGTGGTGATACCTTCACTGGCCCAAACAAACCATACAAGCCTTTCTTATGGACTGAAAACTGGACTGCTCAGTACAGAGTATTTGGTGACCCACCATCCCAAAGATCTGCAGAAGACATTTCCTTCTCAGTTGCCCGCTTCTTCTCAAAGAAAGGGTCTTTGGTCAACTACTATATGTACCATGGTGGAACAAATTTTGGGAGAACAAGCTCGGCCTTTACAACAACCCGTTATTATGATGAAGCTCCTCTTGATGAGTTCGGTCTGCAGAGAGATCCAAAATGGAGTCATCTGAGGGATGTGCACAGGGCTGTGAACCTATGTAAGAGGGCTCTGCTCACGGGTGAGCCTAATACCAAAAAATTGAGCAAATTTCATGAGGTTATAGTCTATGAGAAGCCAGGAAATGATTTATGCGCTGCTTTCATCACTAACAACCACACCAAAACGCCAAAAGTTATAAATTTCAGAGGTACTGACTATTATTTGCCACCACGTTCCATTAGCATCCTTCCTGATTGCAAGACTGTGGTCTTCAACACTCAAAATATTGCTTCACAACATAATTCAAGAAACTTTGAGGAGTCAAAGGCTGCAAACAATCTTAAGTGGGAAGTGTTTTCTGAGACCATTCCAACTACCAAGCAATTGCCACCCAATAAAAACGTTCCTGCAGAGCTTTACAGTTTGCTTAAAGATACCACCGATTATGCATGGTACACCACAAGCGTGGAATTTGGTCCAGAAGACTTGCCAAAGAAGAATTCGATATCCCCAGTTCTTCGTATCATGAGTCTTGGCCATTCAATGCTAGCATTTGTAAATGGAGAATATATTGGATCTAGTCATGGTAGCCATGAGGAGAAAGCTTTTGAATTCCAGAAACCTGTGCACTTCAAGGTTGGAACTAACCAGATAGCTATCTTGGCTGCCACAGTGGGACTCCCAGACAGTGGAGCATACATGGAACACAGGTATTCTGGACCCAAGTCTATAACCATCCTTGGTCTGAACTCTGGCACAATTGGTCTGACTCTTAATGGTTGGGGTCATCAGGTTGGTCTCCAAGGTGAGAAGCTTGGCATTTTCACTGAGAAGGGATCAAAGAAAGTAGAATGGAAGAAAGCCAAGGGAACTGGACCAACTCTCTCATGGTACAAGACAAATTTTGCCACCCCAGAGGGAAGGGATCCTGTTGCTATCAGGATGACTGGTATGGGGAAGGGAATGATTTGGGTCAATGGTCAAAGCATTGGTCGTCACTGGTTGAGTTACCTCTCTCCTCTTGGAAAGCCTACTCAGTCAGAGTACCACATCCCAAGATCTTACCTCAATCCAAAAGATAACTTGCTTGTCATATTTGAGGAGGAGGCAGCAAGTCCAGATAAGATTGTGATCCTAAATGTCAACAGAGATACAATATGTAGTATCATTACTGAGAATCATCCACCCAATGTCAAGTCATGGAAAATTAAGGACCAGAAACTCCAAGCTGTTGTGGATAATCTGGTGCCACAAGCTTACCTCAAGTGTCCAAACCACAAAACCATTAAGGCTGTAGAGTTTGCAAGTTTTGGTGATCCTTTAGGTTTCTGTGGAGGCTTTACTATGGGCAAATGTAATGCACCTGCCACCTTGAAGATTGTTGAGCAGCAATGCTTAGGAAAAGAAGCTTGTTCAGTTAAAATGGACAAAGCAGCCTTCACTAAAGGCCAAGATGGTTGCCCAAGTGTGATGAAGACACTTGCAATCCAAGTGAAGTGTGGCTTCTAG 2484 0.432 MSTLKLLFITIVSLAIIASADDDQNKKTVTYDGRSIIINGNRELLFSGSIHYPRSTPEMWPDLLDKAKHGGLNVIQTYVFWNIHEPGKGNLKFDGNYDLVKFIKLVQEKGMYVTLRVGPFIQAEWNHGGLPYWLREVPDIIFRSNNDPFKKHMKEFVSTVIAKMKEEKLFAPQGGPIILSQIENEYNHIQLAYEEDGVSYVNWAAKMAVALDTGVPWIMCKQKDAPDPVINACNGRHCGDTFTGPNKPYKPFLWTENWTAQYRVFGDPPSQRSAEDISFSVARFFSKKGSLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEFGLQRDPKWSHLRDVHRAVNLCKRALLTGEPNTKKLSKFHEVIVYEKPGNDLCAAFITNNHTKTPKVINFRGTDYYLPPRSISILPDCKTVVFNTQNIASQHNSRNFEESKAANNLKWEVFSETIPTTKQLPPNKNVPAELYSLLKDTTDYAWYTTSVEFGPEDLPKKNSISPVLRIMSLGHSMLAFVNGEYIGSSHGSHEEKAFEFQKPVHFKVGTNQIAILAATVGLPDSGAYMEHRYSGPKSITILGLNSGTIGLTLNGWGHQVGLQGEKLGIFTEKGSKKVEWKKAKGTGPTLSWYKTNFATPEGRDPVAIRMTGMGKGMIWVNGQSIGRHWLSYLSPLGKPTQSEYHIPRSYLNPKDNLLVIFEEEAASPDKIVILNVNRDTICSIITENHPPNVKSWKIKDQKLQAVVDNLVPQAYLKCPNHKTIKAVEFASFGDPLGFCGGFTMGKCNAPATLKIVEQQCLGKEACSVKMDKAAFTKGQDGCPSVMKTLAIQVKCGF* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00448 827 FunFam Beta-galactosidase 25 345 - -
Rops3g00448 827 Gene3D - 403 565 - -
Rops3g00448 827 SUPERFAMILY (Trans)glycosidases 26 345 IPR017853 -
Rops3g00448 827 Gene3D - 732 827 IPR043159 -
Rops3g00448 827 SUPERFAMILY Galactose-binding domain-like 405 566 IPR008979 -
Rops3g00448 827 CDD Gal_Rha_Lectin_BGal 746 825 - -
Rops3g00448 827 FunFam Beta-galactosidase 588 712 - -
Rops3g00448 827 Pfam Galactose binding lectin domain 746 825 IPR000922 GO:0030246
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Rops3g00448 827 Pfam Glycosyl hydrolases family 35 35 341 IPR031330 -
Rops3g00448 827 Gene3D - 589 717 - -
Rops3g00448 827 SUPERFAMILY Galactose-binding domain-like 583 728 IPR008979 -
Rops3g00448 827 ProSiteProfiles SUEL-type lectin domain profile. 742 826 IPR000922 GO:0030246
Rops3g00448 827 Pfam Beta-sandwich domain in beta galactosidase 349 421 IPR041392 -
Rops3g00448 827 Gene3D Glycosidases 25 345 - -
Rops3g00448 827 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
Rops3g00448 827 Pfam Beta-galactosidase jelly roll domain 608 690 IPR025300 -
Rops3g00448 827 PANTHER BETA-GALACTOSIDASE RELATED 18 729 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00448 Rops-Chr3 5557633 5563539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00448 29 826 Glycoside Hydrolase AT2G16730 61.347 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00448 - - gmx:102663614 1385.93