Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00446 ATGGAAACTCGTAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCCTCCTCTGGTCCCACCACTCGTTCTAACAAGCGTGCACGTCTCTCTTCTTCTTCTTCCTCTTCTTCAGCCACCGCCACCAACGTTCCTCTTCGTTCCTCCCTCAACACTCGTTCACGCGCTTCCAGGTCTAAGGAACCCTTGCCGCCTAAGAATCCTCCTCCTGCTCCTCCAATGGACCCTACCAATGAATCCTCCAGTTCGCGACGGGATCGACGTGGCAAGAATTCCGACAGGGATAATTCCGATAAGGGGAAGGAGAAGGAGAAGGAACATGATGTAAGGATTAGGGATAGGGATGCGGAAAGAGGGCTTGCTTTGAACATGGAAAGTGGCGCTGTTGGAGACGACGATGATAACGATAGTGACGGTGGTGTTGGGATTTTGCATCAGAATTTAACGTCTGCTAGTAGTGCACTTCAAGGGCTTCTTCGGAAACTCGGTGCTGGTTTGGATGATCTGCTTCCGTCGTCGGCGATGGGTTCGGGTTCGTCGTCGAATCAGAGTGGGAGGTTGAAGAAGATACTGTTTGGGCTTCGGGCTGATGGGGAAGAAGGTCGGCAAGTTGAGGCTTTGACGCAGCTTTGTGATATGCTTTCTATTGGGACTGAGGAATCGCTTAGTACTTTTTCCGTTGATTCGTTTGTTCCCGTGCTTGTGGGGTTACTGAATCATGAGAGTAATCCTGATATCATGCTTCTTGCGGCCAGGGCACTGACCCATCTCTGTGATGTGCTTCCCTCGTCTTGTGCTGCTGTTGTGCATTATGGTGCGGTTTCAATCTTCTGCGCGAGGTTGCTCACCATAGAGTATATGGACTTGGCCGAACAGTCCCTTCAAGCTCTAAAAAAGATATCTCAGGAGCACCCAACTGCTTGCTTACGAGCGGGTGCTCTCATGGCGGTGCTTTCTTATTTGGATTTCTTCTCAACAGGAGTTCAGAGGGTTGCATTGTCTACTGCTGCAAACATGTGCAAGAAGCTTCCTTCAGATGCAGCTGACTTCGTGATGGAAGCTGTTCCTCTTCTGACAAACCTCCTTCAGTATCATGATGCCAAGGTCCTGGAGCATGCCTCTGTTTGTTTGACTAGAATAGCTGAAGCATTTGCATCGTCTTCGGACAGATTGGATGAATTGTGCCATCATGGACTGCTAGCACAAGCTGCCTCTCTCATTTCAAACAGCAGTTCTGGAGGTGGACAGGCTTCTCTCAGCACGCCAACATATACCGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGGTCCCCTCTTGGAGCTAAAACTTTACTTCATCTTGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCACCAGAGCAGATATTTGAGATTGTAAACCTGGCAAATGAGCTTCTTCCCCCATTGCCGCAAGGAACAATTTCTCTCCCTGTCAGCTCCAACTTGTTTATAAAAGGGCCTATTGTAAAAAAGTCTCCTGCTGGCAGTTCTGGGAAACAAGAAGACTCAAATGGCAATGTTCCTGATATATCGGCTCGTGAGAAAATATTAAATGATCAGCCTGAGCTACTTAAGCAATTTGAGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATACAGTCTTTGTTAAGTGTGACAAATATATCAAGTTTCTTGGCTGGTGTCTTGGCATGGAAAGATCCACATGTTTTGATTCCTGCATTGCAAATTGCTGAAATTCTTATGGAAAAGCTCCCTGCAACATTCTCTAAGATGTTTATCAGAGAAGGTGTCGTCCATGCAGTGGACCAACTTATTTTAGCCGGAAATTCAACCAATGCATCTACTCAAGCATCTTCAGCTGACAAGGATAATGATTCTATATCTGGAGCATCATCTCGTTCTAGGCGTTATAGGCGACGCAGTGGTAACTCCAATCCAGATGGAAATCCTTTGGATGATTTGAAGAGTCCAGTTTCGGTAAATGTTGGTTCACCTCCAAGTTCTGTGGAGATTCCAACAGTAAATTCTAGTATCCGATTATCTGTTAGCACAGCTGCTAAAACCTTTAAAGATAAGTTCTTTCCTACGGATCCTGGGGCTGTTGAAGTGGGTGTTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGATGTTAAATGCTGGTGTTGATGATCAAAGGACCAATAGTAAGGGGAAATCGAAAACTTCTGCATTTGGTCTGGAAGAGTATTTAATTGGGGTCATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGCTGCTTTGCTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGACCCTCAGAAACCCACCAGCCCAAGCTTCGCCAACAAGCACTCACAAGGTTTAAGTCATTTATAGCTGTTGCACTACTTGCCACCATTGACGATGGTTCTGTGGCTCCTATGACTGTCTTGGTCCAAAAGCTTCAGAATGCTTTGTCCTCCTTGGAGCGTTTCCCTGTCGTGCTGAGTCATTCAGCTAGGTCATCTAGTGGAAGTGCACGGCTCTCCTCTGGACTTAGTGTATTATCACAGCCCTTTAAGTTGCGTCTTTGTCGAGCCCAGGGTGAAAAGTCGCTTAGGGACTATTCATCCAATGTTGTACTGATTGATCCATTAGCCAGTTTAGCAGCCATTGAGGAATTTCTCTGGCCTCGCATCCAGCGAAGCGAATCCGGTCAGAAGTCCACTACACCTGCAGGAAATTCTGAATCTGGGACAACTCCTGCAGGAGCTGGTGTTTCATCTCCTGCTTCTACTCCTTCCAATACGCGTCGTCATTCTACCAGATCCAGAGCATCTGTTAATATAGGGGATACGCCCAGAAAAGAAATAACTCCAGATAAAAGCACGAGCTCATCCAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGCAAGAGGGCCTCAAACCAGGAATGCTGCACGTCGAAGAGCAGCTCTTGATAAAGATGCTCAAATGAAGCCTGCAAATGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGCGTTGGTGATTGAAGATGATGATATTTCTGATGATGAAGATGATGAACATGAAGATATGCTGAGGGATGATTCTCTTCCTGTTTGCTTGCCTGACAAAGTACATGATGTGAAATTGGGTGACTCAGCTGAAGAGAGTACTGTTGCTCCTGCAACAAATGATGGCCAGATTATTGCTGCCTCAGGTTCTAGTAGCAAAGTTGGTGCAGTCAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATTCTTCTAGCTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCTAATAGCAGAGGTATCAGGGGTGGCAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATCTTTACCGCTGGTGGGAAGCAGCTTAATAGGCAATTGACTATATATCAGGCTGTTCAAAGACAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTGACTATGTATCCAGTGATGGAAGTAGGCTGTGGGGTGATATTTACACTATAACTTATCAGAGAGCGGATAACCAAATAGACAGGGCTTCCCCTGGAGGTTCAAGTTCAAATACTTCAAAATCCGGCAAATCTGGGTCTGTATCAAATTGCAGTTTGGAAGCCAAGCTGCATCAGACATCCGTGTTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAATCTAATCCTACATACAATATATTGGCACTATTGCGTGTGCTAGAGGGTTTGAACCAGCTTGCACCTCGTTTGAGGGCCCAAATGGTTACTGATAGCTTTGCCGAAGGAAAAATTTTGGACTTAGATGAGCTAGTTGTTCCCACTGGTGCTAGGGTTCCTCCGGAGGAGTTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAAATGCAGGATGCCCTTGCCCTATGCAGTGGGAGTCTTCCCTCATGGTGTTATCAGTTAGCTAAAGCATGCCCTTTTCTGTTTCCTTTTGAGACCCGGCGACAATACTTCTATTCAACCGCCTTTGGGTTATCTCGTGCTCTGTATCGACTCCAGCAGCTGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGGTTAGGGTTGGGAGGTTGCAGCGCCAAAAGGTTCGTGTATCTCGAAATCGCATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTAGGCACTGGCCTGGGTCCCACCCTTGAGTTCTATACACTTCTAAGTCATGACTTACAAAAAGTTGTACTTCAAATGTGGAGATCAAGTTCTTCAGAGAAATATCAAATGGAAATTGATGGAGATGAAAAGAAAATGAAAAGCAGTGATGGCTCTCTTGCTGGAGATGGAGAACTTGTTCAAGCTCCTCTTGGGTTGTTTCCTCGGCCTTGGCCTCCAAATGCTGATGCATCAGAGGGTAGCCAGTTTTGTAAAGTGATTGAATATTTCCGGCTCTTAGGCCGTGTAGTGGCTAAAGCACTTCAAGATGGACGGCTATTGGATTTACCATTGTCAATAGCATTTTATAAACTGGTTCTTGGTCAAGAGCTTGATTTGCTTGACGTTCTTTTTATCGATTCTGAACTTGGGAAAACTTTGCGAGAGTTGAATGCCCTTGTTTGCCGGAAACATTATATTGAATCTTTGAGTGGTGGTTTTACTGATACAATTGCTAATTTGCATTTCCGTGGAGCCCCAATTGAAGATCTCTGCTTGGATTTTACCCTTCCTGGCTTTCCAGAGTACATATTGAAACCTGGAGATGAAATTGTTGATGTCAATAATCTTGAGGAATACATATCCTTGGTGGTTGATGCAACTGTCAAGACTGGAATTATGCGCCAAATAGAAGCATTTAGAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCCGAAGAACTGGACTATTTGCTTTGTGGCCGAAGAGAAATGTGGAAGACTGAGACACTGGCTGATCATATAAAATTTGACCATGGGTACACTGCGAAGAGCCCTGCCATAGTTAATTTACTTGAAATTATGGGAGAGTTCACACCAGAACAACAGCGTGCCTTTTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGATTGGCTGTTCTAAATCCAAAATTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGCTAATGCTTCATCTAATGGGAACGGGCCTTCAGAGACAGCAGATGATGACTTGCCAAGTGTGATGACTTGTGCTAATTATCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACACGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 5682 0.4486 METRSRKRAEASSAAPSSSSSGPTTRSNKRARLSSSSSSSSATATNVPLRSSLNTRSRASRSKEPLPPKNPPPAPPMDPTNESSSSRRDRRGKNSDRDNSDKGKEKEKEHDVRIRDRDAERGLALNMESGAVGDDDDNDSDGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSGSSSNQSGRLKKILFGLRADGEEGRQVEALTQLCDMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSSDRLDELCHHGLLAQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLHLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPVSSNLFIKGPIVKKSPAGSSGKQEDSNGNVPDISAREKILNDQPELLKQFEMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPALQIAEILMEKLPATFSKMFIREGVVHAVDQLILAGNSTNASTQASSADKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKSPVSVNVGSPPSSVEIPTVNSSIRLSVSTAAKTFKDKFFPTDPGAVEVGVTDDLLHLKNLCMMLNAGVDDQRTNSKGKSKTSAFGLEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPSETHQPKLRQQALTRFKSFIAVALLATIDDGSVAPMTVLVQKLQNALSSLERFPVVLSHSARSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWPRIQRSESGQKSTTPAGNSESGTTPAGAGVSSPASTPSNTRRHSTRSRASVNIGDTPRKEITPDKSTSSSKGKGKAVLKPAQEEARGPQTRNAARRRAALDKDAQMKPANGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDEHEDMLRDDSLPVCLPDKVHDVKLGDSAEESTVAPATNDGQIIAASGSSSKVGAVRGSDSADFRSGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSNDPPKLIFTAGGKQLNRQLTIYQAVQRQLVLDEDDDERFAGSDYVSSDGSRLWGDIYTITYQRADNQIDRASPGGSSSNTSKSGKSGSVSNCSLEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLAPRLRAQMVTDSFAEGKILDLDELVVPTGARVPPEEFISSKLTPKLARQMQDALALCSGSLPSWCYQLAKACPFLFPFETRRQYFYSTAFGLSRALYRLQQLQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSSSSEKYQMEIDGDEKKMKSSDGSLAGDGELVQAPLGLFPRPWPPNADASEGSQFCKVIEYFRLLGRVVAKALQDGRLLDLPLSIAFYKLVLGQELDLLDVLFIDSELGKTLRELNALVCRKHYIESLSGGFTDTIANLHFRGAPIEDLCLDFTLPGFPEYILKPGDEIVDVNNLEEYISLVVDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPEELDYLLCGRREMWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANASSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMYTKLLYAISEGQGSFDLS* 1894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00446 1893 MobiDBLite consensus disorder prediction 1047 1061 - -
Rops3g00446 1893 FunFam HECT ubiquitin protein ligase family protein KAK 183 497 - -
Rops3g00446 1893 MobiDBLite consensus disorder prediction 65 79 - -
Rops3g00446 1893 MobiDBLite consensus disorder prediction 10 61 - -
Rops3g00446 1893 ProSiteProfiles HECT domain profile. 1593 1893 IPR000569 GO:0004842
Rops3g00446 1893 SUPERFAMILY Hect, E3 ligase catalytic domain 1464 1886 IPR035983 GO:0004842
Rops3g00446 1893 SMART hect_3 1483 1893 IPR000569 GO:0004842
Rops3g00446 1893 MobiDBLite consensus disorder prediction 1277 1300 - -
Rops3g00446 1893 MobiDBLite consensus disorder prediction 662 681 - -
Rops3g00446 1893 SMART arm_5 221 262 IPR000225 GO:0005515
Rops3g00446 1893 SMART arm_5 304 344 IPR000225 GO:0005515
Rops3g00446 1893 SMART arm_5 347 385 IPR000225 GO:0005515
Rops3g00446 1893 Gene3D Hect, E3 ligase catalytic domains 1412 1655 - -
Rops3g00446 1893 CDD HECTc 1472 1888 IPR000569 GO:0004842
Rops3g00446 1893 Gene3D Hect, E3 ligase catalytic domain 1764 1891 - -
Rops3g00446 1893 Gene3D - 197 669 IPR011989 -
Rops3g00446 1893 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1893 IPR045322 GO:0006511|GO:0061630
Rops3g00446 1893 MobiDBLite consensus disorder prediction 1190 1213 - -
Rops3g00446 1893 SUPERFAMILY ARM repeat 190 658 IPR016024 -
Rops3g00446 1893 FunFam E3 ubiquitin-protein ligase UPL3 1413 1654 - -
Rops3g00446 1893 MobiDBLite consensus disorder prediction 964 1080 - -
Rops3g00446 1893 MobiDBLite consensus disorder prediction 662 717 - -
Rops3g00446 1893 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1762 1892 - -
Rops3g00446 1893 MobiDBLite consensus disorder prediction 964 1010 - -
Rops3g00446 1893 Pfam HECT-domain (ubiquitin-transferase) 1520 1893 IPR000569 GO:0004842
Rops3g00446 1893 MobiDBLite consensus disorder prediction 1 144 - -
Rops3g00446 1893 MobiDBLite consensus disorder prediction 83 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00446 Rops-Chr3 5543343 5553946 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00446 K10590 - gmx:100783336 3086.98