Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00405 ATGGCGAAGCCTTGTGACTTGCAAATCAACATTAATGGTCAGCAGATATTCCTTTTGAAAGAGAAGATTATATCAAAATACTGTGGAAAGGTGAAGAAAATCTTGAATCATCAAAAGAGAAGATGTCATGTGAAGGACTTAGGGATTAGAATCAATGGTTTCCCTGGAGGAGCTTATGGTTTTGAGCTAGTTTCAAGGTTCTGTTACAACAATGGAAAAATCCCAATCACTGTTGCTAATGTGCCTCTCCTCCATTGCTGTGCTGCTTATCTTGGAATGACTGAGGAGGTCTTCAACAACAATCTATTGCAACAAACAGAAACTTTTCTTGAGGGAATCTATTACTGGAAATGGAAAGAAATACTTGTAAGTCTCATGAGTTGCCAGCTGTTTTATACATATGCAGATTCCTGTGGTCTCTTGGAGAAGATCATTTGTGCACTCTTAGCAAAGATTGCCCAAGATTCTGATGCCAACCTCCTCACTTCCTCTTCTTCATCATCATCATCATCTTCACCAGATAGCAATTCTACCAAGAGGTTCTCTCCCTCAACCCAAACTAACCCAGAAAAAATCAAGTCAACTTTGCCTAGCAAAGCATGGTGGTTTGATGATTTGACAACTTTATCCCCAAATATGATTGAGAAACTTTTTCAGTGTCTTGGAGCATATAAAGCTGATAACAACAGCTTAATCCTTACAAGATTTCTGTTGCACTATCTGAAAACAGCTACTCAAACAAGAGTTGTTAATTGCAGAGACAACAGTGAGTATGCTGCTCTTGCAGAAACAGCTGCCTATGGGGTCATATTTGTTGGTAAGAAGACCTTTTCTTGCAGAGGTCTTTTTGGGGTATTAAGAATTGTATCCAGGTTTGGGTTGAGTAGAGGATGCAGAACTGAACTGGAGAAATTGATTGGTGGGATGCTTGAGCAAGCTACATTGGATGATCTTCTAGTCTCTGGGCATGATATGGGAGTTTATTATGATGTTAATTTGGTGATGAGATTGATTAGGCTATTTGTTGATCGCAATGGCTTTGATGAACTGTCTTTACAGAAACTTAAAAGGGTTGGTAGGTTAATTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGATCTCTAAATTTCTTGGAGTTGCTGAATGCTTACCAGACTCTGCAAGGGATTGCTTTGACGGGGTCTACAGAGCCATTGACATCTATCTTGAGTCTCATCCGATTATCACATTTGAGGAAAGATCGAGATTGTGTAGATGTCTTAGTTACAGTAAACTCAGCTTTGAAGCTAGTAAAGATCTGGCCAAAAACCCCAGAATACCTCCAAGGATTGCAATGCAGGCTCTTATTTCTCAACGATCAAAAATTCCAACAAGTAATTTTGTAACTGAGAGTCCAACAATGAACCCTTCCCAAATAGTTTTGTACAATGAAACCAACGGAGACAGCTTCTCCCAGCAGGGAAAAGATAAGAGATTAAACCTGGAGAGCATGCAATGGAAAGTGGTAGAACTGGAGAAATTACCAGAGGGAATGAGTGGTCAGATTTCAAAGTTGTTTAGCCATAATGTCTTACTTAATCCTGTTCGAGCTAGAGCCTTCCCAAGATTTTGTTGA 1626 0.3961 MAKPCDLQININGQQIFLLKEKIISKYCGKVKKILNHQKRRCHVKDLGIRINGFPGGAYGFELVSRFCYNNGKIPITVANVPLLHCCAAYLGMTEEVFNNNLLQQTETFLEGIYYWKWKEILVSLMSCQLFYTYADSCGLLEKIICALLAKIAQDSDANLLTSSSSSSSSSSPDSNSTKRFSPSTQTNPEKIKSTLPSKAWWFDDLTTLSPNMIEKLFQCLGAYKADNNSLILTRFLLHYLKTATQTRVVNCRDNSEYAALAETAAYGVIFVGKKTFSCRGLFGVLRIVSRFGLSRGCRTELEKLIGGMLEQATLDDLLVSGHDMGVYYDVNLVMRLIRLFVDRNGFDELSLQKLKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCFDGVYRAIDIYLESHPIITFEERSRLCRCLSYSKLSFEASKDLAKNPRIPPRIAMQALISQRSKIPTSNFVTESPTMNPSQIVLYNETNGDSFSQQGKDKRLNLESMQWKVVELEKLPEGMSGQISKLFSHNVLLNPVRARAFPRFC* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00405 541 MobiDBLite consensus disorder prediction 164 192 - -
Rops3g00405 541 Pfam NPH3 family 201 434 IPR027356 -
Rops3g00405 541 ProSiteProfiles NPH3 domain profile. 200 458 IPR027356 -
Rops3g00405 541 PANTHER OS12G0117600 PROTEIN 4 510 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00405 Rops-Chr3 5051244 5054354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00405 6 462 EF-hand Containing Proteins AT3G44820 27.470 1.04e-52 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00405 - - gmx:100808259 850.121