Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00398 ATGGCAAGCCATCCTGGGAAATTTGCTCCTTCAAATGGCTCTGTTTATGTATGCAACTTGCCTTTTGGTACTGACGAAAATATGTTGGCTGAATATTTTGGCACCATCGGATTAATCAAGAAAGATAAGCGTACAGGGAGACCGAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGCGGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGTAGTACAATTGGAGTTTATATAGCAGAGTCGAAAAACAAGGATGACCAGGCATATAATTCGGCAGGAGATCCAGGTGTTGCTGGTAATGGTGGTGGACTAGAGGAAACTGCTATTGATGTTGATGATGGTAGTGGAAGAGGTAGAGATCAAAGTGAAACTTCTGCCAAAGCATGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACAAGCTGCTCCAATGTGAATTTTGCTTTTCGTGGCGCATGTAATCGCTGTGGAACTGCTCGCCCTGCTGGTGCTGCTGGAACTGCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGGACAAGATTCAGGGGGTGTTGGCCGTCCTGTTGCTGGAGGACTCTTTGGTCCCAATGACTGGCCTTGTCCAATGTGTGCCAATATCAATTGGGCAAAGCGGACAAAATGCAATATTTGCAATACAAATAAACCCGGGCATAATGAGGGTGGTGTGAGAGGAGGGCGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGCTGTATGATGAATTTGGAAATCTTAAAAAGAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATTGACAGGGATGCTAGAGAAAGAAGTAGAGACAGAGGAAGGGAACGTAATGATGGAGAGAACAGGAACAGAGAGCGAAATGAAAAAGAGAGGCCAAGCAGTCGGAATAGAGAGAGGGACAGGGGAAGAGATCGAGACTGGAATTATGTCGATAGAGACAGAGATTATGGGCGAGATCGGGACCGAAGCAGACACCGTTACTAA 1158 0.4698 MASHPGKFAPSNGSVYVCNLPFGTDENMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAAAAVEWFNNKDFHGSTIGVYIAESKNKDDQAYNSAGDPGVAGNGGGLEETAIDVDDGSGRGRDQSETSAKAWQQEGDWLCPNTSCSNVNFAFRGACNRCGTARPAGAAGTAGAGGRGKGRAGQDSGGVGRPVAGGLFGPNDWPCPMCANINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEELGIDRDARERSRDRGRERNDGENRNRERNEKERPSSRNRERDRGRDRDWNYVDRDRDYGRDRDRSRHRY* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00398 385 SMART rrm1_1 14 95 IPR000504 GO:0003723
Rops3g00398 385 FunFam TATA-binding protein-associated factor 2N isoform X1 147 181 - -
Rops3g00398 385 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Rops3g00398 385 MobiDBLite consensus disorder prediction 244 277 - -
Rops3g00398 385 MobiDBLite consensus disorder prediction 314 385 - -
Rops3g00398 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Rops3g00398 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Rops3g00398 385 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Rops3g00398 385 FunFam Zinc finger Ran-binding domain-containing protein 2 208 242 - -
Rops3g00398 385 MobiDBLite consensus disorder prediction 254 277 - -
Rops3g00398 385 FunFam HIV Tat-specific factor 1 12 96 - -
Rops3g00398 385 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 29 131 - -
Rops3g00398 385 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Rops3g00398 385 SMART zf_4 215 239 IPR001876 -
Rops3g00398 385 SMART zf_4 151 177 IPR001876 -
Rops3g00398 385 CDD RRM_SARFH 15 97 - -
Rops3g00398 385 MobiDBLite consensus disorder prediction 105 145 - -
Rops3g00398 385 Gene3D - 12 95 IPR012677 -
Rops3g00398 385 MobiDBLite consensus disorder prediction 182 202 - -
Rops3g00398 385 SUPERFAMILY Ran binding protein zinc finger-like 144 181 IPR036443 -
Rops3g00398 385 Gene3D - 143 182 - -
Rops3g00398 385 Gene3D - 212 243 - -
Rops3g00398 385 Coils Coil 257 277 - -
Rops3g00398 385 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Rops3g00398 385 MobiDBLite consensus disorder prediction 299 385 - -
Rops3g00398 385 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Rops3g00398 385 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Rops3g00398 385 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Rops3g00398 385 SUPERFAMILY Ran binding protein zinc finger-like 209 243 IPR036443 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00398 - - aip:107628735 554.288