Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00393 ATGTCGGATCTTGAGGCTCCTTTGCGCCCGAAGAGGAAGAAGGTTTGGGTGGACTATTTTGTTCAGTTTCGATGGATACTTGTGATCTTTGTGGTTCTTCCAATCTCTTTCACCATTTACTTCCTTATATACCTTGGGGATGTGAGATCTGAGTGGAAGTCCTACAAGACCCGTCAGAAGGAACATGATGAGAATGTCAAGAAGGTTATCAAACGTCTCAAACAGAGGAACCCATCAAAGGATGGTCTTGTCTGCACTGCTCGTAAGCCCTGGATTGCAGTTGGGATGAGAAATGTTGACTATAAGAGGGCTCGTCATTTTGAAGTTGACTTGTCTGCTTTCAGGAATATACTTGAGATTGACAAAGAAAGAATGATTGCGAGAGTGGAGCCTCTAGTCAACATGGGGCAGATTACCAGGGTGACTGTCCCCATGAATCTTGCCCTTGCTGTAGTTGCAGAGCTGGATGATCTTACTGTTGGTGGACTCATTAATGGATATGGGATAGAAGGAAGCTCTCACAAATATGGCCTGTTTTCTGACACTGTTGTTGCCTATGAAATTGTTTTGGCAGATGGCAGGCTTGTTAGAGCCACCAAGGACAATGAGTACTCTGATCTATTTTATGCCATTCCTTGGTCTCAGGGAACACTTGGGCTTCTTGTTGCTGCTGAGATCAGGCTTATACCCATTAAGGAGTACATGAAGCTAACCTATCAACCTGTTGTTGGTAACCTGAAAGATATTGCACAGGCATATTGTGATTCTTTTGCTCCCAGAGATGGGGACCAGGATAATGATGCGAAAGTTCCAGACTTCGTTGAAACAATGATTTATTCACCTACACGTGCTGTGTGCATGACAGGTAGATATGCTTCGAAAGAAGAGGCCAAGAAGAAGGGGAATAAGATTAACAGTGTGGGATGGTGGTTCAAACCCTGGTTCTATCAACATGCAGAGACAGCACTGAAGAAAGGAACGTTTGTTGAATACATTCCTACCAGAGAATATTATCACAGGCACACAAGGTGTTTGTATTGGGAGGGAAAGCTTATCCTACCATTTGCAGATCAATGGTGGTTTAGGTTTCTGTTTGGCTGGTTGATGCCTCCCAAGGTTTCTCTGCTCAAGGCAACTCAAGGTGAAGCTATAAGAAACTATTACCATGACATGCATGTCATCCAGGACATGCTTGTTCCTCTGTACAAGGTGGGAGATGCATTAGAATGGGTTCACCGTGAGATGGAGGTATACCCCCTTTGGCTCTGTCCACACAAACTGTTCAAGCTGCCTGTCAAAACTATGATTTATCCAGAACCAGGCTTCGAAATGCAAAGCAGGCAGGGAGACACACAAAATGCTCAAATGTACACAGATGTTGGAGTTTACTATGCACCAGGTCCTGTTTTAAGAGGCGAGGTATTTGATGGTGCAGAAGCAGTGCGTCAATTGGAGAACTGGCTGATTGAAAATCATGGTTTTCAACCACAATATGCAGTGTCTGAGCTGAATGAGAAAAACTTCTGGAGGATGTTTGATGCTGGTCTATATGAGCATTGTAGGAGGAAGTATGGAGCTGTTGGGACCTTCATGAGTGTGTACTACAAATCAAAGAAGGGCAGGAAAACTGAGAAGGAAGTGCAGGAAGCAGAGCAAGCACACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGCAGACTGA 1704 0.4425 MSDLEAPLRPKRKKVWVDYFVQFRWILVIFVVLPISFTIYFLIYLGDVRSEWKSYKTRQKEHDENVKKVIKRLKQRNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILEIDKERMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHKYGLFSDTVVAYEIVLADGRLVRATKDNEYSDLFYAIPWSQGTLGLLVAAEIRLIPIKEYMKLTYQPVVGNLKDIAQAYCDSFAPRDGDQDNDAKVPDFVETMIYSPTRAVCMTGRYASKEEAKKKGNKINSVGWWFKPWFYQHAETALKKGTFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRFLFGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEVYPLWLCPHKLFKLPVKTMIYPEPGFEMQSRQGDTQNAQMYTDVGVYYAPGPVLRGEVFDGAEAVRQLENWLIENHGFQPQYAVSELNEKNFWRMFDAGLYEHCRRKYGAVGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYAEVDQPAD* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00393 567 Pfam FAD binding domain 109 198 IPR006094 GO:0050660
Rops3g00393 567 SUPERFAMILY FAD-binding/transporter-associated domain-like 106 231 IPR036318 GO:0050660
Rops3g00393 567 PANTHER 24-DEHYDROCHOLESTEROL REDUCTASE 1 554 IPR040165 -
Rops3g00393 567 Gene3D - 110 231 IPR016169 -
Rops3g00393 567 ProSiteProfiles PCMH-type FAD-binding domain profile. 45 231 IPR016166 GO:0071949
Rops3g00393 567 FunFam delta(24)-sterol reductase 118 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00393 Rops-Chr3 4859910 4862975 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00393 K09828 - gmx:100814521 1112.44