Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00392 ATGATTCTTCAACCAGCTTCTTCTGCCACCTTTCACTTTCACTTCTCTGAAGTTTTCTCCTCCCTTTGTTGTCCCTGCAACAATGAAGTGAAAAACTTCGTTGCATTTCCCTTTTCCAGAAGAAGGAGGAAGCGTTTGATTGCCAATTCTGGGTACCGCAAATTTAGAAGAAAATTGAGTGTTCGTTTATGTGCTTTTCCCACAGATAGTTCCAACCGAAATTTGAACACGGAATTTGCAAATTCAGCTAGAAGGGGTGCTAAAAATTACGTTTTGAAACGGATTTCCAATGAACTTGAAGAAGAAGAGTCACCGGTTCAATTGGGTTCTTCCAATTTTACCAGCTTTCAAGAAGATCCTATTGTGAATAAGCTAAGAACACAATTGGGGGTTATACATCCAATTCCATCACCTCCAATTAATCGTAACGTGGTCGGTTTGTTTGTGTTCTTTTTCTTTGTCGGTGTTGTGTTTGATAAATTGTGGACTTCAAGGAGGAGGAACAAAGTTAGTAGTGAAGATAGCTTGCGTGGTGTGTGGCCACAGGTACCTACCAGCTTCTCATTGTTTTTGGAAAAGGATTTGCAGAGAAAAGAATCAGTTGAATGGGTGAATATGGTGCTGGGGAAGTTATGGAAGGTGTATAGAGGTGCAATTGAGAACTGGCTTATTGGATTGCTTCAACCTGTTATTGATAACTTGAAGAAGCCTGATTATGTGGAGAGGGTTGAGATTAAGCAATTCTCATTGGGGGATGAACCATTGTCTGTTAGGAATGTTGAGCGCAGGACTTCTCGTCGGGTGAATGATTTACAGTACCAGATAGGCCTTAGGTATACTGGTGGTGCTCGAATGCTGTTAATGCTTTCTCTGAAATTTGGCATTATCCCAATTGTTGTACCTGTTGGTGTTCGAGATTTTGACATTGATGGTGAACTTTGGGTAAAATTACGACTAATACCAACAGAACCTTGGGTGGGAGCTGTTTCATGGGCTTTTGTTTCACTGCCAAAGATCAAGTTTGAACTGTCTCCATTCCGATTGTTCAATTTAATGGCAATTCCAGTTCTCTCAATGTTTTTGACCAAACTTCTCACGGTAGATTTACCTAGACTATTTGTACGGCCAAAGAAAATTGTTTTGGATTTCCAGAAGGGGAAAGCTGTTGGTCCCGTTGCTGACGTTGTTAAATCTGGAGAAATCCAAGAAGGAAACAAGGATTCTGTTGGTGAACTATCCGTTACTCTGGTGGATGCTCGAAAGCTTCCATATATTTTCTATGGCAAGACAGATCCTTATGTTATTCTTAGCCTTGGAAATCAAATTATTTGCAGCAAAAAGAACAGTCAAACTACTGTCATGGGGCCACCTGGAATGCCAATTTGGAATCAGGATTTTCATATGCTTGTTACCAACCCCAAAAAGCAGAAGTTATACATCCAAGTAAAGGACGCATTGGGATTTGTAGATTTGCCTATCGGTACGGGAGAGGTTGATTTGGGATCTCTTCAAGACACTGTACCAACAGACAGAATTGTGGTTTTACAAGGAGGTTGGGGGTTTTTAGGAAAGGGCTCCTCTGGGGAGATATTACTTCGGCTGACCTATAAAGCATATGTGGAGGATGAGGAAGATGACAAGAGTGAGGTGGATTCCACTGATATAGATGTTTCTGATGATGAGTTGTCTGATTCAGAAGAAGCAAACGTCACTGATGAGGAGGGTGTAAGAGATTCTATGTACGAAACAGATAAAGAGTCATTTATGGATGTTTTGGCAGCATTAATTGTCAGCGAAGAATTCCAAGGGATAGTAGCATCTGAGACGGGGTTTACCAAAGTTTTGGATAATAGCTCAAATACAGGGTTTAAAGTATCAAAATCTCCTGTTGCCGATGCTGAATCAATTCCTCCTAGTTCTGATAATTCTGGAGGTTCTGGAGTTGCAGGGTCAGCCTTATTTTGGCTTGCTGTGATAACTGGCATAGCACTGCTAATTACTGTTAACATTGGAGGTTCAAGTCTCTTCAATCCTTAA 2037 0.4089 MILQPASSATFHFHFSEVFSSLCCPCNNEVKNFVAFPFSRRRRKRLIANSGYRKFRRKLSVRLCAFPTDSSNRNLNTEFANSARRGAKNYVLKRISNELEEEESPVQLGSSNFTSFQEDPIVNKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVVFDKLWTSRRRNKVSSEDSLRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGAIENWLIGLLQPVIDNLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLTKLLTVDLPRLFVRPKKIVLDFQKGKAVGPVADVVKSGEIQEGNKDSVGELSVTLVDARKLPYIFYGKTDPYVILSLGNQIICSKKNSQTTVMGPPGMPIWNQDFHMLVTNPKKQKLYIQVKDALGFVDLPIGTGEVDLGSLQDTVPTDRIVVLQGGWGFLGKGSSGEILLRLTYKAYVEDEEDDKSEVDSTDIDVSDDELSDSEEANVTDEEGVRDSMYETDKESFMDVLAALIVSEEFQGIVASETGFTKVLDNSSNTGFKVSKSPVADAESIPPSSDNSGGSGVAGSALFWLAVITGIALLITVNIGGSSLFNP* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00392 678 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 197 384 IPR031468 GO:0008289
Rops3g00392 678 MobiDBLite consensus disorder prediction 544 569 - -
Rops3g00392 678 MobiDBLite consensus disorder prediction 543 576 - -
Rops3g00392 678 ProSiteProfiles C2 domain profile. 397 513 IPR000008 -
Rops3g00392 678 SMART C2_3c 411 512 IPR000008 -
Rops3g00392 678 CDD SMP_SF 219 382 - -
Rops3g00392 678 Gene3D C2 domain 395 539 IPR035892 -
Rops3g00392 678 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 410 538 IPR035892 -
Rops3g00392 678 Pfam C2 domain 410 506 IPR000008 -
Rops3g00392 678 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 53 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00392 Rops-Chr3 4842372 4848948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00392 410 576 Acyl Lipid Metabolism Gene Families AT4G13550 28.022 1.20e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00392 - - adu:107477171 1034.25